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- High and distinct range-edge genetic diversity despite local bottlenecksPublication . Assis, J.; Castilho Coelho, N.; Alberto, F.; Valero, Myriam; Raimondi, P. T.; Reed, D. C.; Serrão, EsterThe genetic consequences of living on the edge of distributional ranges have been the subject of a largely unresolved debate. Populations occurring along persistent low latitude ranges (rear-edge) are expected to retain high and unique genetic diversity. In contrast, currently less favourable environmental conditions limiting population size at such range-edges may have caused genetic erosion that prevails over past historical effects, with potential consequences on reducing future adaptive capacity. The present study provides an empirical test of whether population declines towards a peripheral range might be reflected on decreasing diversity and increasing population isolation and differentiation. We compare population genetic differentiation and diversity with trends in abundance along a latitudinal gradient towards the peripheral distribution range of Saccorhiza polyschides, a large brown seaweed that is the main structural species of kelp forests in SW Europe. Signatures of recent bottleneck events were also evaluated to determine whether the recently recorded distributional shifts had a negative influence on effective population size. Our findings show decreasing population density and increasing spatial fragmentation and local extinctions towards the southern edge. Genetic data revealed two well supported groups with a central contact zone. As predicted, higher differentiation and signs of bottlenecks were found at the southern edge region. However, a decrease in genetic diversity associated with this pattern was not verified. Surprisingly, genetic diversity increased towards the edge despite bottlenecks and much lower densities, suggesting that extinctions and recolonizations have not strongly reduced diversity or that diversity might have been even higher there in the past, a process of shifting genetic baselines.
- Population genetics of Zostera noltii along the west Iberian coast: Consequences of small population size, habitat discontinuity and near-shore currentsPublication . Diekmann, O. E.; Coyer, J. A.; Ferreira, J.; Olsen, J. L.; Stam, W. T.; Pearson, G. A.; Serrão, EsterThe effects of oceanographic patterns on marine genetic biodiversity along the SW Iberian Peninsula are poorly understood. We addressed the question of whether gene flow in this region depends solely on geographic distance between isolated patches of suitable habitat or if there are superimposed effects correlated with other factors such as current patterns. Zostera noltii, the dwarf eelgrass, is the keystone habitat-structuring seagrass species on intertidal mudflats along the Iberian west coast. We used 9 microsatellite loci to analyze population genetic diversity and differentiation for all existing 8 populations from NW Spain (Ria de Vigo) to SW Spain (Puerto Real, Cadiz). Populations are highly genetically differentiated as shown by high significant FST,Wright’s fixation index, (0.08 to 0.26) values. A neighbor-joining tree based on Reynold’s distances computed from allele frequencies revealed a split between northern and southern populations (bootstrap support of 84%). This pattern of differentiation can be explained by (1) ocean surface current patterns present during Z. noltii’s reproductive season which cause a dispersal barrier between the northern and southern populations of this region, (2) habitat isolation, due to large geographic distances between suitable habitats, preventing frequent gene flow, and (3) small effective population sizes, causing high drift and thus faster differentiation rates.
- Fast sporophyte replacement after removal suggests banks of latent microscopic stages of Laminaria Ochroleuca (phaeophyceae) in tide pools in northern PortugalPublication . Barradas, Ana; Alberto, F.; Engelen, Aschwin; Serrão, EsterThis study investigated the effects of a physical disturbance consisting of the removal of adult kelps (Laminaria ochroleuca Bachelot de la Pylaie)and their corresponding understorey turf assemblage in tide pools in northern Portugal.
- Effects of clam harvesting on sexual reproduction of the seagrass Zostera noltiiPublication . Alexandre, Ana; Santos, Rui; Serrão, EsterThe sexual reproduction of Zostera noltii in the Ria Formosa lagoon (southern Portugal) was assessed by quantifying the variation in both flowering effort and evolution of maturation stages during the fertile season. The effects of clam harvesting on the sexual reproduction of Z. noltii were investigated using both descriptive and experimental approaches. Meadows disturbed by clam harvesting were compared with undisturbed meadows in 2 sectors of the lagoon. In both sectors, disturbed meadows showed significantly lower vegetative shoot density and significantly higher reproductive effort. The reproductive effort in the western disturbed meadows was 2-fold higher than in undisturbed meadows, whereas in eastern disturbed meadows it was 4-fold higher. In disturbed meadows, early maturation stages were found until the end of the flowering season and higher seed production was observed. Both the negative effect of clam harvesting on Z. noltii density and the positive effect on its reproductive effort were confirmed by manipulative field experiments. Plots that were experimentally harvested during the fertile season showed significantly lower vegetative shoot density and higher reproductive effort than unharvested plots. Results suggest that Z. noltii responds to clam harvesting disturbance by both increasing its reproductive effort and extending its fertile season.
- Assessing genetic diversity in clonal organisms: low diversity or low resolution? Combining power and cost efficiency in selecting markersPublication . ARNAUD-HAOND, Sophie; Alberto, F.; Teixeira, Sara; Procaccini, G.; Serrão, Ester; Duarte, C. M.The increasing use of molecular tools to study populations of clonal organisms leads us to question whether the low polymorphism found in many studies reflects limited genetic diversity in populations or the limitations of the markers used. Here we used microsatellite datasets for two sea grass species to provide a combinatory statistic, combined with a likelihood approach to estimate the probability of identical multilocus genotypes (MLGs) to be shared by distinct individuals, in order to ascertain the efficiency of the markers used and to optimize cost-efficiently the choice of markers to use for deriving unbiased estimates of genetic diversity. These results strongly indicate that conclusions from studies on clonal organisms derived using markers showing low polymorphism, including microsatellites, should be reassessed using appropriate polymorphic markers.
- Comparative analysis of stability-genetic diversity in seagrass (Posidonia oceanica) meadows yields unexpected resultsPublication . ARNAUD-HAOND, Sophie; Marbà, N.; Diaz-Almela, E.; Serrão, Ester; Duarte, C. M.The diversity–stability relationship is the subject of a long-standing debate in ecology, but the genetic component of diversity has seldom been explored. In this study, we analyzed the interplay between genetic diversity and demographic responses to environmental pressures. This analysis included 30 meadows formed by the Mediterranean endemic seagrass, Posidonia oceanica, showing a wide range of population dynamics ranging from a near equilibrium state to steep decline due to strong environmental pressures close to aquaculture installations. Our results show that sedimentation rates are much better predictors of mortality than clonal or genetic components. An unexpected positive trend was observed between genotypic diversity and mortality, along with a negative relationship between allelic richness and net population growth. Yet such trends disappeared when excluding the most extreme cases of disturbance and mortality, suggesting the occurrence of a threshold below which no relationship exists. These results contrast with the positive relationship between genotypic diversity and resistance or resilience observed in previous manipulative experiments on seagrass. We discuss the reasons for this discrepancy, including the difficulties in designing experiments reflecting the complexity of natural meadows.
- Temperature effects on the microscopic haploid stage development of laminaria ochroleuca and sacchoriza polyschides, kelps with contrasting life historiesPublication . Pereira, T. R.; Engelen, Aschwin; Pearson, G. A.; Serrão, Ester; Destombe, C.; Valero, MyriamKelp forests are one of the most diverse and productive ecosystems worldwide. Global climate change and human exploitation threaten the stability of many of these ecosystems.
- New microsatellite markers for the endemic Mediterranean seagrass Posidonia oceanicaPublication . Alberto, F.; Correia, L.; ARNAUD-HAOND, Sophie; Billot, C.; Duarte, C. M.; Serrão, EsterThe seagrass Posidonia oceanica is endemic to the Mediterranean Sea, where it plays an important role in coastal ecosystem dynamics. Because of this important role and concerns about the observed regression of some meadows, population genetic studies of this species have been promoted. However, the markers used until now were not polymorphic enough to efficiently assess the level and spatial pattern of genetic variability. Hypervariable molecular markers were obtained by screening a genomic library enriched for microsatellite dinucleotide repeats. Among 25 primer pairs defined, eight amplified polymorphic microsatellites with an encouraging level of variability at the two geographical scales sampled.
- Permanent genetic resources added to molecular ecology resources database 1 May 2009-31 July 2009Publication . Almany, G. R.; De Arruda, M. P.; Arthofer, W.; Atallah, Z. K.; Beissinger, S. R.; Berumen, M. L.; Bogdanowicz, S. M.; Brown, S. D.; Bruford, M. W.; Burdine, C.; Busch, J. W.; Campbell, N. R.; Carey, D.; Carstens, B. C.; Chu, K. H.; Cubeta, M. A.; Cuda, J. P.; Cui, Z.; Datnoff, L. E.; D'Ávila, J. A.; Davis, E. S.; Davis, R. M.; Diekmann, O. E.; Eizirik, E.; Fargallo, J. A.; Fernandes, F.; Fukuda, H.; Gale, L. R.; Gallagher, E.; Gao, Y.; Girard, P.; Godhe, A.; Gonçalves, E. C.; Gouveia, Licínia; Grajczyk, A. M.; Grose, M. J.; Gu, Z.; Halldén, C.; Härnström, K.; Hemmingsen, A. H.; Serrão, EsterThis article documents the addition of 512 microsatellite marker loci and nine pairs of Single Nucleotide Polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Alcippe morrisonia morrisonia, Bashania fangiana, Bashania fargesii, Chaetodon vagabundus, Colletes floralis, Coluber constrictor flaviventris, Coptotermes gestroi, Crotophaga major, Cyprinella lutrensis, Danaus plexippus, Fagus grandifolia, Falco tinnunculus, Fletcherimyia fletcheri, Hydrilla verticillata, Laterallus jamaicensis coturniculus, Leavenworthia alabamica, Marmosops incanus, Miichthys miiuy, Nasua nasua, Noturus exilis, Odontesthes bonariensis, Quadrula fragosa, Pinctada maxima, Pseudaletia separata, Pseudoperonospora cubensis, Podocarpus elatus, Portunus trituberculatus, Rhagoletis cerasi, Rhinella schneideri, Sarracenia alata, Skeletonema marinoi, Sminthurus viridis, Syngnathus abaster, Uroteuthis (Photololigo) chinensis, Verticillium dahliae, Wasmannia auropunctata, and Zygochlamys patagonica. These loci were cross-tested on the following species: Chaetodon baronessa, Falco columbarius, Falco eleonorae, Falco naumanni, Falco peregrinus, Falco subbuteo, Didelphis aurita, Gracilinanus microtarsus, Marmosops paulensis, Monodelphis Americana, Odontesthes hatcheri, Podocarpus grayi, Podocarpus lawrencei, Podocarpus smithii, Portunus pelagicus, Syngnathus acus, Syngnathus typhle,Uroteuthis (Photololigo) edulis, Uroteuthis (Photololigo) duvauceli and Verticillium albo-atrum. This article also documents the addition of nine sequencing primer pairs and sixteen allele specific primers or probes for Oncorhynchus mykiss and Oncorhynchus tshawytscha; these primers and assays were cross-tested in both species.
- Grazing by Diadema antillarum (Philippi) upon algal communities on rocky substratesPublication . Alves, Filipe; Chícharo, Luís; Serrão, Ester; Abreu, A. D.Grazing by Diadema antillarum sea urchins is well documented for coral reefs, although information is scarce for the eastern part of the Atlantic Ocean, where rocky substrate dominates the sea bottom. This study analysed grazing activity by D. antillarum upon the algal communities living on rock substrates, and its possible impact on the subtidal communities. Controlled feeding experiments using exclusion cages were performed between May and September 1998 at Madeira Island (NE Atlantic). Three experimental treatments were used: (1) closed cages to exclude sea urchins, (2) open cage controls, and (3) uncaged controls (nine replicates in each treatment). After four months, in September 1998, the percentage algal cover was quantified. One-way analysis of variance followed by Post Hoc Tukey (HSD) tests showed significant differences between algal abundance in the presence (uncaged and open cage controls) or absence (closed cages) of sea urchins. In the areas where D. antillarum was excluded (closed cages), algal abundance increased by about 10% in the four-month period. Diadema antillarum thus effectively reduces algal abundance, and this may have important consequences in determining the algal community structure of rocky substrate.