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  • First record of Ocinebrina nicolai (Mollusca: Gastropoda: Muricidae: Ocenebrinae) in North-Eastern Atlantic waters
    Publication . Afonso, Carlos; Bonomolo, Giuseppe; Monteiro, Pedro; Bentes, Luis; Oliveira, Frederico; Veiga, Pedro; Rangel, Mafalda; Sousa, Inês; Leite, Laura; Gonçalves, J. M. S.
    Ocinebrina nicolai Monterosato, 1884 a marine mollusc belonging to the Muricidae family is reported from Algarve, south coast of Portugal for the first time and is a new record for the biodiversity of the Portuguese malacological fauna and northeastern Atlantic waters. This species with a medium-size shell for the genus (14–16 mm) was initially sampled during a baseline project that studied marine biotopes in the central Algarve region. This short note presents a brief diagnosis of the species, provides local information on geographical distribution, habitat, and compares it with other congeneric species found in Portugal: Ocinebrina aciculata (Lamarck, 1822) and Ocinebrina edwardsii (Payraudeau, 1826).
  • Replaying the tape: recurring biogeographical patterns in Cape Verde Conus after 12 million years
    Publication . Cunha, R. L.; Tenorio, Manuel J.; Afonso, Carlos; Castilho, Rita; Zardoya, R.
    Isolated oceanic islands are excellent natural laboratories to test the relative role of historical contingency and determinism in evolutionary diversification. Endemics of the marine venomous snail Conus in the Cape Verde archipelago were originated from at least two independent colonizations of ‘small’ and ‘large’ shelled species separated by 12 million years. In this study, we have reconstructed phylogenetic relationships within large-shelled Conus (C. ateralbus, C. pseudonivifer, C. trochulus, and C. venulatus) based on mitochondrial cox1 and nad4 haplotype sequences. The reconstructed molecular phylogeny revealed three well-supported and relatively divergent clades (A, B, and C) that do not correspond to current species classification based on shell colour and banding patterns. Clade A grouped specimens assigned either to C. pseudonivifer or C. trochulus, clade B is composed of specimens assigned to C. venulatus, and clade C comprises specimens assigned either to C. venulatus or C. ateralbus. Geometric morphometric analyses found significant differences between the radular teeth shape of C. pseudonivifer/C. trochulus and C. venulatus/C. ateralbus. In clades A and B, northwestern Boavista and Maio specimens cluster together to the exclusion of eastern Boavista samples. In Sal, populations form a monophyletic island assemblage (clade C). The large-shelled Conus have remarkably replicated biogeographical patterns of diversification of small-shelled Conus. Similar selective forces (i.e. nonplanktonic lecithotrophy with limited larval dispersal and allopatric diversification) together with repeated instances of low sea level stands during glacial maxima that allowed connection between islands, have overcome the effect of historical contingency, and explain the observed recurring biogeographical patterns.
  • First record of Anachis aliceae (Mollusca: Gastropoda: Columbellidae) in the Algarve, south coast of Portugal
    Publication . Afonso, Carlos; Monsecour, Kevin
    The marine gastropod Anachis aliceae (Pallary, 1900) is reported with certainty for the first time from the Algarve, south coast of Portugal from species-rich rocky priority biotope. Several live specimens of this species belonging to the Columbellidae family were collected and identified from by-catch samples, recovered from octopus traps set at depths between 50 and 70 m off Ponta da Piedade. Taxonomic validation of the newly recorded species is based on the comparison to other related species within the genus.
  • Marxan as a zoning tool for development and economic purposed areas - Aquaculture Management Areas (AMAs)
    Publication . Sales Henriques, Nuno; Monteiro, Pedro; Bentes, Luis; Oliveira, Frederico; Afonso, Carlos; Gonçalves, Jorge Manuel Santos
    The increased number of human activities within the marine environment and the demand for maritime space has increased to a point where in some parts of the globe the demand for maritime space has exceeded the available area. The overlapping objectives and activities have caused severe conflicts among users and with the natural marine environment itself. For that reason, holistic strategies such as Ecosystem Based Management (EBM) and Maritime Spatial Planning (MSP) have been evolved and developed to sustainably manage the marine environment, avoiding conflicts and creating synergies. Spatial analysis tools like Marxan have been used for several years as decision support tools mostly for conservation plans, such as design and establishment of protected areas. In this study we approach the potential of this tool with a different purpose in mind: instead of using the available information of the region for the development of a conservation plan, we used this tool and the available information to select areas to establish Aquaculture Management Areas (AMAs). We also intended to analyse how the existing features of the region would affect the final result of a spatial plan aimed to establish areas for economic and development purposes. We conclude that the use of Marxan can be advantageous to support the planning and development of coastal regions, not only in a conservationist point of view (as it has been mostly used), but also into a developing and economic driven approach. This tool can be particularly useful in regions or situations where there is a large number of stakeholders, ecological and geographical features that could potentially conflict with the establishment, the management and the success of the proposed management areas. (C) 2017 Elsevier Ltd. All rights reserved.
  • Variability of prey preferences and uptake of anthropogenic particles by juvenile white seabream in a coastal lagoon nursery ground
    Publication . Müller, Carolin; Erzini, Karim; Dudeck, Tim; Cruz, Joana; Corona, Luana Santos; Abrunhosa, Felipe; Afonso, Carlos; Mateus, Miguel Ângelo Franco; Orro, Cristina; Monteiro, Pedro; Ekau, Werner
    Marine plastic litter, originating from land-based sources, enters the marine environment by passing through coastal ecosystems such as lagoons and estuaries. As early life history stages (ELHS) of many commercially important fish species rely on these transitional areas as nursery grounds, we hypothesized that they encounter a spatial gradient of habitat quality and pollution from inner to outer parts of their vital environment. With sizes < 5 mm, anthropogenic particles (AP), among them microplastic (MP) fibers and fragments, entail a high bioavailability for ELHS of fish, potentially facilitating AP uptake at early developmental stages which may have implications for their survival and growth. This study provides a contextualization baseline between feeding preferences and uptake of AP by the white seabream Diplodus sargus (Linnaeus, 1758) in an estuarine nursery ground on the southern coast of Portugal. Juvenile fish showed a generalized, omnivorous feeding mode with differences in trophic resource utilization between individuals collected at distinct seagrass meadows in the lagoon. A total of 23.13% of the fish (n = 147) were detected with AP in the gastrointestinal tract, and the mean number of AP per AP-feeding individual was 1.64 +/- 1.04, with anthropogenic fibers (n = 47) occurring more frequently than fragments (n = 9). Knowledge of the underlying factors for MP ingestion will be greatly enhanced by considering environmental conditions along with species-stage and life-stage specific feeding modes and prey preferences which shape the uptake probability of anthropogenic fibers and fragments.
  • Chromosome-level genome of the venomous snail Kalloconus canariensis: a valuable model for venomics and comparative genomics
    Publication . Herráez-Pérez, Ana; Pardos-Blas, José Ramón; Afonso, Carlos; Tenorio, Manuel J; Zardoya, Rafael
    Background: Genomes are powerful resources to understand the evolutionary mechanisms underpinning the origin and diversification of the venoms of cone snails (Conidae: Caenogastropoda) and could aid in the development of novel drugs. Findings: Here, we used PacBio continuous long reads and Omni-C data to assemble the chromosome-level genome of Kalloconus canariensis, a vermivorous cone endemic to the Canary Islands. The final genome size was 2.87 Gb, with a N50 of 79.75 Mb and 91% of the reads located into the 35 largest scaffolds. Up to 55.80% of the genome was annotated as repetitive regions, being class I of transposable elements (16.65%) predominant. The annotation estimated 34,287 gene models. Comparative analysis of this genome with the 2 cone snail genomes released to date (Dendroconus betulinus and Lautoconus ventricosus) revealed similar genome sizes and organization, although chromosome sizes tended to be shorter in K. canariensis. Phylogenetic relationships within subclass Caenogastropoda were recovered with strong statistical support. The family Conidae was recovered as a clade, with K. canariensis plus L. ventricosus sister to D. betulinus. Conclusions: Despite the great diversity of cone snails ( >900 species) and their venoms (hundreds of peptides per species), only 2 recently reported genomes are available for the group. The high-quality chromosome-level assembly of K. canariensis will be a valuable reference for studying the origin and evolution of conotoxin genes as well as whole-genome duplication events during gastropod evolution.
  • Co-design of a marine protected area zoning and the lessons learned from it
    Publication . e Costa, Horta; Guimarães, M. Helena; Rangel, Mafalda; Ressurreição, Adriana; Monteiro, Pedro; Oliveira, Frederico; Bentes, Luis; Sales Henriques, Nuno; Sousa, Inês; Alexandre, Sofia; Pontes, João; Afonso, Carlos; Belackova, Adela; Marçalo, Ana; Cardoso-Andrade, Mariana; Correia, António José; Lobo, Vanda; Gonçalves, Emanuel J.; Pitta e Cunha, Tiago; Gonçalves, Jorge Manuel Santos
    Marine Protected Areas (MPAs) are a tool to safeguard marine natural systems, yet their effectiveness depends on how well they are integrated into the existing socioeconomic context. Stakeholder engagement in MPA design can contribute to increasing integration. This study focuses on the co-design of an MPA between researchers, public administration, the private sector, and non-governmental organizations. The proposed MPA is in Portugal and includes an area that is a hotspot for biodiversity and economic activities. This is the first MPA proposal in mainland Portugal co-designed using a participatory approach. This study highlights the steps of the zoning process and synthesizes the eight main lessons learned, useful for other cases, particularly for relatively small coastal MPAs with multiple socioeconomic activities. Three zoning proposals were developed and discussed within the participatory process. The proposals considered the best scientific and local knowledge available and were defined using ecological, socioeconomic, and shape-area guiding principles. In an iterative manner and following a participatory approach, compromises with stakeholders were achieved, and a final proposal, scientifically sound and socially accepted by most stakeholders, was delivered to the government. The final zoning plan will achieve ambitious conservation goals, including the largest fully protected area to be declared in mainland Portugal, while minimizing the impacts on the existing economic activities and promoting its sustainability. This process resulted in valuable lessons that may be applied elsewhere and guide future MPA implementation or rezoning of existing ones. These transdisciplinary and participatory processes can be time and resource-consuming but are vital for ensuring MPA effectiveness.
  • Mitogenomic phylogeny of cone snails endemic to Senegal
    Publication . Abalde, Samuel; Tenorio, Manuel J.; Afonso, Carlos; Zardoya, Rafael
    Cone snails attain in Senegal one of their highest peaks of species diversity throughout the continental coast of Western Africa. A total of 15 endemic species have been described, all placed in the genus Lautoconus. While there is ample data regarding the morphology of the shell and the radular tooth of these species, virtually nothing is known regarding the genetic diversity and phylogenetic relationships of one of the most endangered groups of cones. In this work, we determined the complete or near complete (only lacking the control region) mitochondrial (mt) genomes of 17 specimens representing 11 endemic species (Lautoconus belairensis, Lautoconus bruguieresi, Lautoconus cacao, Lautoconus cloveri, Lautoconus cf. echinophilus, Lautoconus guinaicus, Lautoconus hybridus, Lautoconus senegalensis, Lautoconus mercator, Lautoconus taslei, and Lautoconus unifasciatus). We also sequenced the complete mt genome of Lautoconus guanche from the Canary Islands, which has been related to the cones endemic to Senegal. All mt genomes share the same gene arrangement, which conforms to the consensus reported for Conidae, Neogastropoda and Caenogastropoda. Phylogenetic analyses using probabilistic methods recovered three major lineages, whose divergence coincided in time with sea level and ocean current changes as well as temperature fluctuations during the Messinian salinity crisis and the PlioPleistocene transition. Furthermore, the three lineages corresponded to distinct types of radular tooth (robust, small, and elongated), suggesting that dietary specialization could be an additional evolutionary driver in the diversification of the cones endemic to Senegal. The reconstructed phylogeny showed several cases of phenotypic convergence (cryptic species) and questions the validity of some species (ecotypes or phenotypic plasticity), both results having important taxonomic and conservation consequences. (C) 2017 Elsevier Inc. All rights reserved.
  • Effects of different slipping methods on the mortality of sardine, Sardina pilchardus, after purse-seine capture off the Portuguese Southern coast (Algarve)
    Publication . Marçalo, Ana; Guerreiro, Pedro; Bentes, Luis; Rangel, Mafalda; Monteiro, Pedro; Oliveira, Frederico; Afonso, Carlos; Pousao-Ferreira, Pedro; Benoit, Hugues P.; Breen, Mike; Erzini, Karim; Gonçalves, Jorge Manuel Santos
    The effects of two different slipping methods on the survival, physical and physiological response of sardines, Sardina pilchardus, captured in a purse-seine fishery were investigated in southern Portugal. Sardines were collected and transferred into holding tanks onboard a commercial fishing vessel after being captured, crowded and deliberately released using two slipping procedures: standard and modified. The standard slipping procedure aggregated fish at high densities and made them "roll over" the floatline, while the modified procedure aggregated the fish at moderate densities and enabled them to escape through an opening created by adding weights to the floatline. Both slipping methods were compared with minimally harmed non-slipped sardines (sardines collected from the loose pocket of the purse seine). Survival rates were monitored in captivity over 28 days using three replicates for each treatment. The estimated survival of sardines was 43.6% for the non-slipped fish, 44.7% for the modified slipping and 11.7% for the standard slipping treatments. Scale loss indicated the level of physical impact experienced, with dead fish from the non-slipped and modified slipping technique showing significantly lower scale loss than those fish from the standard slipping treatment within the same period. Of the physiological indicators of stress measured, cortisol, glucose, lactate and osmolality attained peak values during slipping and up to the first hours after introduction to captivity. This work indicates that although delayed mortality after release may be substantial, appropriately modified slipping techniques significantly enhance survival of slipped sardines.
  • Setting performance indicators for coastal marine protected areas: an expert-based methodology
    Publication . Cardoso-Andrade, Mariana; Queiroga, Henrique; Rangel, Mafalda; Sousa, Inês; Belackova, Adela; Bentes, Luis; Oliveira, Frederico; Monteiro, Pedro; Sales Henriques, Nuno; Afonso, Carlos; Silva, Ana F.; Quintella, Bernardo R.; Costa, José L.; Pais, Miguel P.; Henriques, Sofia; Batista, Marisa I.; Franco, Gustavo; Gonçalves, Emanuel J.; Henriques, Miguel; Leonardo, Teresa; Coelho, Paula; Comas-González, Robert; Fernández, Laura P.; Quiles-Pons, Carla; Costa, André; Espírito-Santo, Cristina; Castro, João J.; Arenas, Francisco; Ramos, Sandra; Ferreira, Vasco; Gonçalves, Jorge Manuel Santos; Horta E Costa, Barbara
    Marine Protected Areas (MPAs) require effective indicators to assess their performance, in compliance with the goals of relevant national and international commitments. Achieving and prioritizing shortlists of multidisciplinary indicators demands a significant effort from specialists to depict the multiple conservation and socioeconomic interests, and the large complexity of natural systems. The present paper describes a structured expert-based methodology (process and outputs) to co-define a list of multidisciplinary MPA performance indicators. This work was promoted by the management authority of coastal MPAs in mainland Portugal to gather a consensual and feasible list of indicators that would guide the design of a future national monitoring program. Hence, Portuguese coastal MPAs served as a case study to develop such a process between 2019 and 2020. In the end, participants (1) agreed on a shortlist of prioritized indicators (i.e., environmental, governance, and socioeconomic indicators) and (2) defined minimum monitoring frequencies for the indicators in this list, compatible with the potential replicability of the associated survey methods. The present approach recommends that management plans incorporate monitoring procedures and survey methods, with a validated list of indicators and associated monitoring periodicity, agreed among researchers, MPA managers and governance experts. The proposed methodology, and the lessons learned from it, can support future processes aiming to define and prioritize MPA performance indicators.