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- Estimating fishing effort in small-scale fisheries using high-resolution spatio-temporal tracking data (an implementation framework illustrated with case studies from Portugal)Publication . Rufino, Marta M.; Mendo, Tania; Samarão, João; Gaspar, MiguelSmall-scale fisheries (SSF, boats < 12 m) represent 90% of this sector at a worldwide scale and 84% of the EU fleet. Mapping the areas and intensity where the fishing operations occur is essential for spatial planning, safety, fisheries sustainability and biodiversity conservation. The EU is currently regulating position tracking of SSF fishing vessels requiring precision resolved geo-positional data (sec to min resolution).Here we developed a series of procedures aimed at categorizing fishing boats behaviour using high resolution data. Our integrated approach involve novel routines aimed at (i) produce an expert validated data set, (ii) pre-processing of positional data, (iii) establishing minimal required temporal resolution, and (iv) final assessment of an optimized classification model. Objective (iv) was implemented by using statistical and machine learning (ML) routines, using novel combinations of fixed thresholds estimates using regression trees and classification methods based on anti-mode, Gaussian Mixture Models (GMM), Expectation Maximisation (EM) algorithms, Hidden Markov Models (HMM) and Random Forest (RF). Of relevance, the final evaluation framework in-corporates both error quantification and fishing effort indicators. We tested the method by running through four SSF fisheries from Portugal recorded every 30 sec, with 183 boat trips validated, and concluded that the more robust time interval for data acquisition in these metiers should be <2 min and that mode and random forest methods with pre-data treatment gave the best results. A special effort was concentrated in a visual support provided by the results produced by this new method, making its interpretation easier, thus facilitating trans-ference and translation into other fishery levels. After the current validation in the Portuguese SSF fleet, we posit that our novel procedure has the potential to serve as an integrated quantitative approach to the EU SSF management.
- The influence of coastal processes on inner shelf sediment distribution: The Eastern Algarve Shelf (Southern Portugal)Publication . Rosa, F.; Rufino, M. M.; Ferreira, O.; Matias, Ana; Brito, Ana C.; Gaspar, MiguelThis study examines sediment distribution patterns in the Southeastern Algarve inner shelf (southern Portugal), an area characterized by marked variations in its coastal environment and low continental supply of sediments. The specific goals of this study were to identify the principal sediment sources and the factors influencing sediment transport paths and deposition. A total of 199 samples, collected along the shelf from the Guadiana River mouth to Olhos de Agua, were analyzed. Grain-size distribution and parameters were measured for all the samples. Terrigenous and biogenic components of sand were identified in 38 samples, and results analyzed using multivariate non-linear multidimension scaling (MDS) and cluster analysis. Patterns of sediment distribution in this area of the inner shelf vary according to water depth and exhibit significant longshore variation, related mainly to coastal processes (littoral drift and storm currents) and to a lower degree to sediment sources. Sand is dominant at all depths, reflecting the influence of littoral drift in the supply and redistribution of shelf sediments. Fine and gravel-sized deposits are significant in specific areas and are usually associated with changes in sediment composition. Five sectors have been identified according to sedimentary dynamics. The results, based on geostatistical and multivariate analysis, have allowed detailed sediment distribution maps to be generated, which represent an update of the existing cartography and serve as a tool for the management of coastal and marine resources. They have been furthermore compared with inner shelf sediment dynamics in other regions worldwide, to distinguish between specific regional responses to forcing mechanisms and processes that are more generalized within this type of shelf environments. In this context, the results obtained results in the Algarve study area are of great interest for the understanding of sediment dynamics of sand dominated inner shelves with reduced continental supply.
- Tanaidaceans (Crustacea: Peracarida: Apseudidae) from southern Portugal with description of the new species Apseudopsis formosus, report of five first records and a biogeographic overview: unexpected expansion or understudied hotspot?Publication . Carvalho, Andre N.; Pereira, Fabio; Piló, David; Gaspar, Miguel; Esquete, PatriciaThis study describes Apseudopsis formosus sp. nov., a new apseudomorph tanaidacean species from the Ria Formosa lagoon (southern Portugal). Species description was based on 223 individuals (22 juveniles, 60 males and 141 females), comprising diverse developmental stages (juveniles II, males I and II, preparatory, copulatory and intermediate females). The total length of the studied population ranged from 2.2 to 3.0 mm in juveniles, 2.5 to 4.8 mm in males and 2.9 to 4.9 mm in females. Overall, Apseudopsis formosus sp. nov. differs from congeneric tanaidaceans from the Atlantic Ocean and Mediterranean Sea by the presence of combined different morphological characters such as short pointed rostrum, posterolateral pointed corners on pereonites 2-6, hyposphenium only on pereonite 6, antennular outer flagellum 7- to 10-segmented, inner flagellum 3-segmented and five spines on propodus of pereopod 1, and sexual dimorphism evidenced by a pronounced mid-dorsal triangular wing-shaped protuberance on male merus cheliped, unique in Apseudopsis genus. At each studied developmental stage, some individuals presented abnormalities in spination, having only four spines in one of the propodus of pereopod 1. Additionally, five first records of Apseudopsis from the Algarve coast (A. adami, A. bacescui, A. elisae, A. mediterraneus and A. uncidigitatus) are reported for Portuguese waters. A biogeographic overview of the genus Apseudopsis is presented through the compilation and mapping of all worldwide reported occurrences. Passive dispersion can explain the most recent species distribution, yet not disregarding that the study area is taxonomically understudied. This study contributes to improve the current knowledge on tanaidacean taxonomy and updates the geographical distribution range of the Apseudopsis-complex.
- Depth segregation phenomenon in Donax trunculus (Bivalvia : Donacidae) populations of the Algarve coast (southern Portugal)Publication . Gaspar, Miguel; Chicharo, Luis; Vasconcelos, P.; Garcia, A; Santos, A. R.; Monteiro, C. C.A study was undertaken to evaluate the existence of depth segregation between size classes of Donax trunculus populations that occur along the Algarve coast (southern Portugal). Five collecting areas were sampled in the Ria Formosa barrier islands, namely in the Culatra, Barreta and Armona Islands, between March and June 1998. The study was based on size frequency distribution analysis and shell biometric relationships, The size frequency distribution showed the predominance of smaller individuals (<25 mm) in the renewal area (0.5-1.0 m depth) and the prevalence of larger individuals (greater than or equal to25 mm) at greater depths (4.0-6.0 in depth). The biometric study revealed the existence of significant differences in the type of growth between size classes in relation to depth distribution and burrowing activity. On the basis of these results, some specific management measures were proposed for this important bivalve fishery, taking into account the distinct fishing strategies and operations (manual and boat-operated dredging) performed at different depths.
- Evaluation of macrobenthic community responses to dredging through a multimetric approach: Effective or apparent recovery?Publication . Piló, David; Carvalho, A. N.; Pereira, F.; Coelho, H. E.; Gaspar, MiguelMacrobenthic responses to dredging activities were evaluated in a mesotidal coastal lagoon (Ria Formosa South Portugal). Four areas (2 dredged and 2 non-dredged) were analysed along different dredging situations (pre-dredging, during dredge 1, during dredge 2 and post-dredging). Beyond the evaluation of sediment descriptors and classical ecological indicators (number of species and abundance), the beta diversity component (partitioned into turnover and nestedness) was used to detect dredging effects on macrobenthic communities, together with a multivariate analysis (both quantitative and qualitative) including the ecological status assessment. Results confirmed the limitations of alpha diversity indicators in detecting dredging effects in naturally stressed systems, given the absence of clear patterns regarding number of species, abundance and equitability among areas and dredging situations. Moreover, post-dredging presented a higher number of species compared to pre-dredging, suggesting a positive disequilibrium induced by these activities. In contrast, partitioned beta diversity analysis revealed higher nestedness values at dredged areas, while turnover clearly prevailed at non-dredged ones. Such results suggest an effective impact of dredging on these communities, namely through the decrease of rarer species after sediment removal. This qualitative analysis, based on presence absence data (Sorensen dissimilarity), was complemented by multivariate analysis (SIMPER and PERMANOVA) based on quantitative data (Bray-Curtis dissimilarity), highlighting the importance of adopting both approaches to detect dredging impacts on benthic communities. Lower effectiveness was found for M-AMBI index when evaluating benthic Ecological Status, since the apparent absence of organic matter and sediment composition shifts induced by dredging, together with the noticeable high diversity even during dredging situations, strongly limited the analysis. The multimetric approach here proposed can contribute to detect dredging effects on lagoonal benthic communities by disentangling the responses caused by dredging from those resulting from the system natural dynamics.
- Reproductive cycle of the golden carpet shell (Polititapes aureus) in the Ria Formosa lagoon (southern Portugal)Publication . Moura, Paula; Matias, Ana Catarina; Vasconcelos, Paulo; Roque, Cláudia; Joaquim, Sandra; Matias, Domitília; Gaspar, MiguelThe present study described the gametogenesis and assessed the pattern of energy storage throughout the reproductive cycle of the golden carpet shell (Polititapes aureus) from the Ria Formosa lagoon (southern Portugal). Monthly sampling was performed for two years (March 2016–February 2018) and the study was based on gonad histology, complemented by the estimation of the mean gonadal index, body condition index and biochemical composition. The species’ reproductive cycle presented a seasonal pattern, with a resting period mainly between October and January and gametogenesis beginning around February– March. The spawning season of P. aureus was shorter in 2016 (June–September) than in 2017 (May–October). Furthermore, ripe individuals were very scarce (1.3%) in 2017 compared with the previous year (11.4%). Mean gonadal index (GI) reflected the species’ reproductive cycle and the body condition index (CI) and biochemical composition of the individuals exhibited high variation between years. Regarding the biochemical composition, proteins ranged between 190.6 and 595.2 μg mg−1 , glycogen from 5.7 to 102.6 μg mg−1 and total lipids between 31.6 and 80.7 μg mg−1 . The reproduction of P. aureus was strongly influenced by fluctuations in both seawater temperature and chlorophyll a, as reflected through the temporal variation in the gonadal cycle, condition index and biochemical composition. Overall, the information gathered in this study is valuable to propose scientifically based harvesting management measures for the long-term sustainable exploitation of this shellfish resource, further reinforcing the importance of implementing adaptive fishery management strategies to cope with global climate change.
- Population and production parameters of the wedge clam Donax trunculus (Linnaeus, 1758) in intertidal areas on the southwest Spanish coast: Considerations in relation to protected areasPublication . Delgado, Marina; Silva, Luis; Gomez, Santiago; Masferrer, Esther; Cojan, Miguel; Gaspar, MiguelThe main objectives of this study were (i) to provide an updated age-length key for D. trunculus from Atlantic waters, and (ii) to evaluate population dynamics, the timing of recruitment and production parameters of the wedge clam Donax trunculus in two moderately exposed sandy beaches (the protected area of Donana National Park and the tourist destination of Isla Canela) along the littoral of Huelva (SW Spain). First an in-depth analysis of the shell and updated estimation of growth parameters of the intertidal D. trunculus population were performed between January 2014 and July 2015 using two different methods i) thin-layer cross section (TL) (ii) length-frequency distributions (LFD). Von Bertalanffy growth functions provided an asymptotic length of 46 mm (LFD) and 46.7 mm (TL) and growth constants of 0.48 (LFD) and 0.47 yr(-1) (TL) in Donana beach. In addition, several deformities as well as signs of shell repair were observed. Population dynamics analyses through length frequency distribution clarified the timing of recruitment (February-March and July). The mean annual biomass ((B) over bar) of intertidal populations of D. trunculus ranged between 3.03 (Donana) and 3.31 g ash-free dry mass (AFDW) m(-2) yr(-1) (Isla Canela). Individual production showed the highest value at 27 mm length (0.117 g AFDW m(-2) yr(-1)) and annual production (P) ranged between 3.40 (Donana) and 4.91 g (Isla Canela), resulting in renewal rate (P/(B) over bar) values between 1.03 and 1.61, respectively. The present results, together with information on environmental parameters, revealed clear differences in population dynamics and production between beaches related to the presence or absence of a protection figure.
- The Atlantic blue crab Callinectes sapidus Rathbun, 1896 expands its non-native distribution into the Ria Formosa lagoon and the Guadiana estuary (SW-Iberian Peninsula, Europe)Publication . Morais, Pedro; Gaspar, Miguel; Garel, Erwan; Baptista, Vânia; Cruz, Joana; Cerveira, Inês; Leitão, Francisco; Teodosio, MariaThe Atlantic blue crab Callinectes sapidus Rathbun, 1896 is native in the western Atlantic, however it is a non-indigenous species across Europe since 1900, among other world regions. In this paper, we report the first occurrences of this species in the Ria Formosa lagoon and in the Guadiana estuary (SW-Iberian Peninsula, Europe) which occurred in 2016 and July 2017, respectively. We hypothesize that the introduction of this species into these ecosystems might be due to the expansion of the Guadalquivir estuary population through natural processes (larval advection, active movement), or due to unintended introduction events after being transported aboard fishing boats, or, less likely, through ballast water. Changes in Guadiana's river flow after the construction of the Alqueva dam might also explain the presence of another non-indigenous species in the Guadiana estuary. The hypotheses presented, regarding the introduction of the Atlantic blue crab into these ecosystems and of its co-occurrence with other decapod species, are framed in a broader context to serve as a future research framework. The use of the Atlantic blue crab as a new fishing resource is also proposed, namely if it is to be used exclusively by local communities and if no deleterious impacts upon other fisheries and the ecosystem occur from this new fishery.
- Socio-economic, operational and technical characterisation of the harvesting of gooseneck barnacle (Pollicipes pollicipes) in SW Portugal: Insights towards fishery co-managementPublication . Carvalho, Andre N.; Vasconcelos, Paulo; Pilo, David; Pereira, Fabio; Gaspar, MiguelThe present study characterised the socio-economic, operational and technical aspects of harvesting the gooseneck barnacle (Pollicipes pollicipes) along the southwestern coast of Portugal. For this purpose, face-to-face interviews were conducted with commercial harvesters of the two most representative fishery associations (covering 51% licensed harvesters) in the area of the Parque Natural do Sudoeste Alentejano e Costa Vicentina. Based on traditional ecological knowledge, this study confirmed the local importance, ancestral character and family traditions of this activity, which constitutes the exclusive occupation of nearly half of the interviewed harvesters and an important source for household incomes. In addition, data was also gathered on preferential fishing zones, harvesting effort and duration, daily catches and selling prices. The main concerns, problems and difficulties experienced in this activity relate to the excessive number of recreational harvesters, creating problems at the levels of exploitation, commercialisation, management and inspection. The study further confirms the rising interest and involvement of the commercial harvesters in enhancing the competences of the local fishery associations. In particular, local harvesters want to encourage the development of a co-management system comprising spatial-temporal measures to avoid conflicts of use over space and resources, as well as innovative marketing strategies to improve the recognition, value and traceability of the shellfish. Overall, the information gathered is most valuable for adopting an alternative approach based on the cooperation and co-responsibility at local and regional levels, involving the stakeholders in the proposal of management measures adapted to the specificities of this area, activity and resource.
- The influence of dredge design on the catch of Callista chione (Linnaeus, 1758)Publication . Gaspar, Miguel; Dias, M. D.; Campos, Aida; Monteiro, C. C.; Santos, M. N.; Teodosio, Maria; Chícharo, LuísTo evaluate a possible introduction of a new dredge in the fishery of Callista chione (Linnaeus, 1758), IPIMAR has conducted a study with the objective of comparing the efficiency of two dredges (traditional dredge and the new dredge design) and evaluating their impact on the benthic community. The experiments were carried out during March 1999 on the Southwest coast of Portugal, from a site off Troia. Three different tow durations of 5, 10 and 20 min were investigated. A total of 24 hauls were accomplished, 4 for each tow duration and dredge. The experiments were conducted by attaching a cover bag with a 20 mm mesh to the gear. After each haul, the catches in the bag and in the cover were sorted separately. All individuals retained were attributed scores on a scale of 1–4 in which 1 equates to good and 4 equates to dead. The results obtained showed that catches from the traditional dredge (TD) are composed of a great fraction of juveniles of C. chione, while in the new dredge (NDD) catches are composed, almost entirely, by individuals with a superior size to the minimum legal length (50 mm). This result indicates that the mesh of the bag of the TD used in the exploitation of this resource is not adequate. For the 3 different tow durations, the mean fishing yield obtained for the NDD was always superior to the TD, due to its greater efficiency in capture. The proportion of by-catch is significantly higher when the TD is used. For all 3 tow duration, the TD caused mortalities on the target species and on the macrobenthic community in the same order of magnitude as the NDD. Since the fishery of C. chione is managed by daily quotas per boat, when using the NDD the impact on the macrobenthic community is reduced by about 50% due to its greater efficiency of capture. Another advantage in the usage of the NDD relatively to the TD, is to allow the smallest individuals (independently of the species) to escape rapidly through the metallic bars on the grid, increasing their probability of survival.