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The gene regulation knowledge commons: the action area of GREEKC

2022Journal article Restricted access
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dc.contributor.authorKuiper, Martin
dc.contributor.authorBonello, Joseph
dc.contributor.authorFernández-Breis, Jesualdo T.
dc.contributor.authorBucher, Philipp
dc.contributor.authorFutschik, Matthias
dc.contributor.authorGaudet, Pascale
dc.contributor.authorKulakovskiy, Ivan V.
dc.contributor.authorLicata, Luana
dc.contributor.authorLogie, Colin
dc.contributor.authorLovering, Ruth C.
dc.contributor.authorMakeev, Vsevolod J.
dc.contributor.authorOrchard, Sandra
dc.contributor.authorPanni, Simona
dc.contributor.authorPerfetto, Livia
dc.contributor.authorSant, David
dc.contributor.authorSchulz, Stefan
dc.contributor.authorVercruysse, Steven
dc.contributor.authorZerbino, Daniel R.
dc.contributor.authorLægreid, Astrid
dc.date.accessioned2022-02-24T11:10:34Z
dc.date.available2022-02-24T11:10:34Z
dc.date.issued2022
dc.description.abstractAs computational modeling becomes more essential to analyze and understand biological regulatory mechanisms, governance of the many databases and knowledge bases that support this domain is crucial to guarantee reliability and interoperability of resources. To address this, the COST Action Gene Regulation Ensemble Effort for the Knowledge Commons (GREEKC, CA15205, www.greekc.org) organized nine workshops in a four-year period, starting September 2016. The workshops brought together a wide range of experts from all over the world working on various steps in the knowledge management process that focuses on understanding gene regulatory mechanisms. The discussions between ontologists, curators, text miners, biologists, bioinformaticians, philosophers and computational scientists spawned a host of activities aimed to standardize and update existing knowledge management workflows and involve end-users in the process of designing the Gene Regulation Knowledge Commons (GRKC). Here the GREEKC consortium describes its main achievements in improving this GRKC.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.doi10.1016/j.bbagrm.2021.194768pt_PT
dc.identifier.issn1874-9399
dc.identifier.urihttp://hdl.handle.net/10400.1/17603
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherElsevierpt_PT
dc.relationDeciphering the gene regulatory networks of cyanobacteria
dc.subjectKnowledge commonspt_PT
dc.subjectBiocurationpt_PT
dc.subjectOntologiespt_PT
dc.subjectComputational biologypt_PT
dc.subjectText miningpt_PT
dc.subjectWeb servicespt_PT
dc.titleThe gene regulation knowledge commons: the action area of GREEKCpt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.awardTitleDeciphering the gene regulatory networks of cyanobacteria
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/Investigador FCT/IF%2F00881%2F2013%2FCP1198%2FCT0001/PT
oaire.citation.issue1pt_PT
oaire.citation.startPage194768pt_PT
oaire.citation.titleBiochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanismspt_PT
oaire.citation.volume1865pt_PT
oaire.fundingStreamInvestigador FCT
person.familyNameFutschik
person.givenNameMatthias
person.identifier.ciencia-idA71B-AD01-3501
person.identifier.orcid0000-0002-6245-8071
person.identifier.scopus-author-id14017989400
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsrestrictedAccesspt_PT
rcaap.typearticlept_PT
relation.isAuthorOfPublicationd58f3269-c7e1-4c22-b094-5cfe6750821b
relation.isAuthorOfPublication.latestForDiscoveryd58f3269-c7e1-4c22-b094-5cfe6750821b
relation.isProjectOfPublication2994c09a-b440-45c8-abe0-8e0a883d29c6
relation.isProjectOfPublication.latestForDiscovery2994c09a-b440-45c8-abe0-8e0a883d29c6

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