Browsing by Author "Bargelloni, L."
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- A genetic linkage map of the hermaphrodite teleost fish Sparus aurata L.Publication . Bargelloni, L.; Franch, R.; Patarnello, T.; Tsalavouta, M.; Sarropoulou, E.; Magoulas, A.; Kotoulas, G.; Chatziplis, D.; Georgoudis, A.; Louro, Bruno; Power, DeborahThe gilthead sea bream (Sparus aurata L.) is a marine fish of great importance for fisheries and aquaculture. It has also a peculiar sex-determination system, being a protandrous hermaphrodite. Here we report the construction of a first-generation genetic linkage map for S. aurata, based on 204 microsatellite markers. Twenty-six linkage groups (LG) were found. The total map length was 1241.9 cM. The ratio between sex-specific map lengths was 1:1.2 (male:female). Comparison with a preliminary radiation hybrid (RH) map reveals a good concordance, as all markers located in a single LG are located in a single RH group, except for Ad-25 and CId-31. Comparison with the Tetraodon nigroviridis genome revealed a considerable number of evolutionary conserved regions (ECRs) between the two species. The mean size of ECRs was 182 bp (sequence identity 60–90%). Forty-one ECRs have a known chromosomal location in the pufferfish genome. Despite the limited number of anchoring points, significant syntenic relationships were found. The linkage map presented here provides a robust comparative framework for QTL analysis in S. aurata and is a step toward the identification of genetic loci involved both in the determination of economically important traits and in the individual timing of sex reversal.
- Discord in the family Sparidae (Teleostei): divergent phylogeographical patterns across the Atlantic-Mediterranean dividePublication . Bargelloni, L.; Alarcon, J. A.; Alvarez, M. C.; Penzo, E.; Magoulas, A.; Reis, C; Patarnello, T.The Strait of Gibraltar has been proposed to be the divide between two marine biogeographical regions, the Mediterranean Sea and the Northeast Atlantic. Intraspecific studies have shown, for several of the examined species, a reduction of gene flow between the two basins. The present study examines genetic variation at nuclear and mitochondrial loci in five marine teleost species belonging to the family Sparidae. Four samples for each species were analysed spanning the Northeast Atlantic and the Mediterranean. For all individuals 17 allozyme loci were scored and a combined single strand conformation polymorphism-sequencing approach was used to survey approximately 190 bp of the mitochondrial DNA (mtDNA) D-loop region. All five species share similar biological features. For three species, namely Lithognathus mormyrus, Spondyliosoma cantharus, and Dentex dentex, large mtDNA divergence was observed between Atlantic and Mediterranean samples. Little or no mtDNA differentiation was found in the other two species, Pagrus pagrus and Pagellus bogaraveo. Allozyme data revealed strong differentiation when comparing Atlantic and Mediterranean samples of L. mormyrus and D. dentex, moderate for P. pagrus, and no differentiation for P. bogaraveo and S. cantharus. These results provide evidence for a sharp phylogeographical break (sensu Avise) between the Atlantic and the Mediterranean for two (or possibly three) sparid species of the five investigated. At the same time, the obtained results for the other two species raise the question on which ecological/historical factors might have caused the observed discrepancy in the geographical distribution of genetic variation among otherwise biologically similar species.
- Population genetics and transcriptomics of Manila Clam (Ruditapes philippinarum) and carpet-shell clam (R. decussatus): implications for aquaculturePublication . Saavedra, C.; Milan, M.; Cordero, D.; Leite, R.; Pena, J. B.; Delgado, M.; Liu, B.; Ruesink, J.; Cancela, M. Leonor; Bargelloni, L.; Patarnello, T.Knowledge of the genetics of populations is essential to understand performance differences among races and local stocks of shellfish species. We have studied the population genetics of the native Asian -but now globally cultured- Manila clam, and the native European carpet-shell clam, which are exploited in Europe by a combination of wild bed harvesting and supplementation with hatchery spat. Using mtDNA and nuclear markers we found that both species show clear phylogeographic breaks at the Mediterranean Sea (carpet-shell clam) and at the East China Sea (Manila clam).