Percorrer por autor "Stock, Willem"
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- A community perspective on the concept of marine holobionts: current status, challenges, and future directionsPublication . Dittami, Simon M.; Arboleda, Enrique; Auguet, Jean-Christophe; Bigalke, Arite; Briand, Enora; Cárdenas, Paco; Cardini, Ulisse; Decelle, Johan; Engelen, AH; Eveillard, Damien; Gachon, Claire M.M.; Griffiths, Sarah M.; Harder, Tilmann; Kayal, Ehsan; Kazamia, Elena; Lallier, François H.; Medina, Mónica; Marzinelli, Ezequiel M.; Morganti, Teresa Maria; Núñez Pons, Laura; Prado, Soizic; Pintado, José; Saha, Mahasweta; Selosse, Marc-André; Skillings, Derek; Stock, Willem; Sunagawa, Shinichi; Toulza, Eve; Vorobev, Alexey; Leblanc, Catherine; Not, FabriceHost-microbe interactions play crucial roles in marine ecosystems. However, we still have very little understanding of the mechanisms that govern these relationships, the evolutionary processes that shape them, and their ecological consequences. The holobiont concept is a renewed paradigm in biology that can help to describe and understand these complex systems. It posits that a host and its associated microbiota with which it interacts, form a holobiont, and have to be studied together as a coherent biological and functional unit to understand its biology, ecology, and evolution. Here we discuss critical concepts and opportunities in marine holobiont research and identify key challenges in the field. We highlight the potential economic, sociological, and environmental impacts of the holobiont concept in marine biological, evolutionary, and environmental sciences. Given the connectivity and the unexplored biodiversity specific to marine ecosystems, a deeper understanding of such complex systems requires further technological and conceptual advances, e.g., the development of controlled experimental model systems for holobionts from all major lineages and the modeling of (info)chemical-mediated interactions between organisms. Here we propose that one significant challenge is to bridge cross-disciplinary research on tractable model systems in order to address key ecological and evolutionary questions. This first step is crucial to decipher the main drivers of the dynamics and evolution of holobionts and to account for the holobiont concept in applied areas, such as the conservation, management, and exploitation of marine ecosystems and resources, where practical solutions to predict and mitigate the impact of human activities are more important than ever.
- Coral garden conservation and restoration: how host taxon and ex-situ maintenance affect the microbiome of soft and hard coralsPublication . Rola, Marcellina; Coelho, Márcio A. G.; Pruckner, Christian; Quiroga-Pérez, Manuela; Stock, Willem; Baylina, Núria; Engelen, Aschwin; Wägele, Heike; Serrao, Ester A.; Frade, Pedro R.Temperate coral gardens are dense coral formations, which support rich marine species diversity, enabling benthic-pelagic coupling. Over the past decades, coral gardens have been increasingly threatened by bottom fishing, oil and gas exploitation, and climate change. Microbiome research bears great potential for assisted resilience in targeted conservation and restoration approaches. Yet, fundamental parameters of the coral garden microbiome remain poorly understood. Here, we provide a first broad record of bacterial communities associated with NE Atlantic coral garden corals and their community changes as response to human maintenance in conservation research. Octocorals (10 species), scleractinians (2 species) and one black coral species, were opportunistically collected from fisheries bycatch at 60-480 m depth around Cape St. Vincent (SW Portugal). Metabarcoding of the 16S-rRNA gene using third-generation sequencing revealed a high microbial host-specificity in the wild-collected coral species analyzed, and supported the importance of bacterial families Endozoicomonadaceae (mean relative abundance +/- SE; 28.3 +/- 10.5%), Spirochaetaceae (8.2 +/- 5.8%) and Spongiibacteraceae (4.6 +/- 1.8%). Endozoicomonadaceae were particularly dominant in the octocoral order Malacalcyonacea (67.7 +/- 14.5%). The low microbial alpha diversity and limited interspecies differences among the Malacalcyonacea species suggest a conserved microbiome within this group, as compared to orders Scleralcyonacea, Antipatharia, and Scleractinia. Microbial responses to ex-situ maintenance of two branching octocoral species, Eunicella verrucosa and Paramuricea cf. grayi (Order Malacalcyonacea), were investigated (1) over 45 days under standardized aquaria conditions in the research station (Ramalhete Marine Station, CCMAR) and (2) over long-term captivity in two public aquaria, Ocean & aacute;rio de Lisboa and Zoomarine. Eunicella verrucosa displayed a stronger microbial community shift to short-term captivity (45 days), in contrast to greater microbiome stability in P. cf. grayi. However, long-term captivity in public aquaria led to microbiome shifts in both species. The strong host specificity of microbial diversity and its response to maintenance indicate that conservation and restoration of coral gardens require taxon-specific strategies.
- Progress and future directions for seaweed holobiont researchPublication . Saha, Mahasweta; Dittami, Simon M.; Chan, Cheong Xin; Raina, Jean‐Baptiste; Stock, Willem; Ghaderiardakani, Fatemeh; John, Ann Mary Valathuparambil Baby; Corr, Shauna; Schleyer, Guy; Todd, Jonathan; Cardini, Ulisse; Bengtsson, Mia M.; Prado, Soizic; Skillings, Derek; Sonnenschein, Eva C.; Engelen, Aschwin; Wang, Gaoge; Wichard, Thomas; Brodie, Juliet; Leblanc, Catherine; Egan, SuhelenIn the marine environment, seaweeds (i.e. marine macroalgae) provide a wide range of ecological services and economic benefits. Like land plants, seaweeds do not provide these services in isolation, rather they rely on their associated microbial communities, which together with the host form the seaweed holobiont. However, there is a poor understanding of the mechanisms shaping these complex seaweed–microbe interactions, and of the evolutionary processes underlying these interactions. Here, we identify the current research challenges and opportunities in the field of seaweed holobiont biology. We argue that identifying the key microbial partners, knowing how they are recruited, and understanding their specific function and their relevance across all seaweed life history stages are among the knowledge gaps that are particularly important to address, especially in the context of the environmental challenges threatening seaweeds. We further discuss future approaches to study seaweed holobionts, and how we can apply the holobiont concept to natural or engineered seaweed ecosystems.