Browsing by Issue Date, starting with "2018-01"
Now showing 1 - 10 of 44
Results Per Page
Sort Options
- Genetic and oceanographic tools reveal high population connectivity and diversity in the endangered pen shell Pinna nobilisPublication . Wesselmann, Marlene; Gonzalez-Wanguemert, Mercedes; Serrao, Ester A.; Engelen, Aschwin H.; Renault, Lionel; Garcia-March, Jose R.; Duarte, Carlos M.; Hendriks, IrisFor marine meta-populations with source-sink dynamics knowledge about genetic connectivity is important to conserve biodiversity and design marine protected areas (MPAs). We evaluate connectivity of a Mediterranean sessile species, Pinna nobilis. To address a large geographical scale, partial sequences of cytochrome oxidase I (COI, 590 bp) were used to evaluate phylogeographical patterns in the Western Mediterranean, and in the whole basin using overlapping sequences from the literature (243 bp). Additionally, we combined (1) larval trajectories based on oceanographic currents and early life-history traits and (2) 10 highly polymorphic microsatellite loci collected in the Western Mediterranean. COI results provided evidence for high diversity and low inter-population differentiation. Microsatellite genotypes showed increasing genetic differentiation with oceanographic transport time (isolation by oceanographic distance (IBD) set by marine currents). Genetic differentiation was detected between Banyuls and Murcia and between Murcia and Mallorca. However, no genetic break was detected between the Balearic populations and the mainland. Migration rates together with numerical Lagrangian simulations showed that (i) the Ebro Delta is a larval source for the Balearic populations (ii) Alicante is a sink population, accumulating allelic diversity from nearby populations. The inferred connectivity can be applied in the development of MPA networks in the Western Mediterranean.
- A synthesis of European seahorse taxonomy, population structure, and habitat use as a basis for assessment, monitoring and conservationPublication . Woodall, Lucy C.; Otero-Ferrer, Francisco; Correia, Miguel; Curtis, Janelle M. R.; Garrick-Maidment, Neil; Shaw, Paul W.; Koldewey, Heather J.Accurate taxonomy, population demography, and habitat descriptors inform species threat assessments and the design of effective conservation measures. Here we combine published studies with new genetic, morphological and habitat data that were collected from seahorse populations located along the European and North African coastlines to help inform management decisions for European seahorses. This study confirms the presence of only two native seahorse species (Hippocampus guttulatus and H. hippocampus) across Europe, with sporadic occurrence of non-native seahorse species in European waters. For the two native species, our findings demonstrate that highly variable morphological characteristics, such as size and presence or number of cirri, are unreliable for distinguishing species. Both species exhibit sex dimorphism with females being significantly larger. Across its range, H. guttulatus were larger and found at higher densities in cooler waters, and individuals in the Black Sea were significantly smaller than in other populations. H. hippocampus were significantly larger in Senegal. Hippocampus guttulatus tends to have higher density populations than H. hippocampus when they occur sympatrically. Although these species are often associated with seagrass beds, data show both species inhabit a wide variety of shallow habitats and use a mixture of holdfasts. We suggest an international mosaic of protected areas focused on multiple habitat types as the first step to successful assessment, monitoring and conservation management of these Data Deficient species.
- Long-term population dynamics: Theory and reality in a peatland ecosystemPublication . Connor, Simon; Colombaroli, Daniele; Confortini, Federico; Gobet, Erika; Ilyashuk, Boris P.; Ilyashuk, Elena A.; van Leeuwen, Jacqueline F. N.; Lamentowicz, Mariusz; van der Knaap, Willem O.; Malysheva, Elena; Marchetto, Aldo; Margalitadze, Nino; Mazei, Yuri; Mitchell, Edward A. D.; Payne, Richard J.; Ammann, Brigitta1. Population dynamics is a field rich in theory and poor in long-term observational data. Finding sources of long-term data is critical as ecosystems around the globe continue to change in ways that current theories and models have failed to predict. Here we show how long-term ecological data can improve our understanding about palaeo-population change in response to external environmental factors, antecedent conditions and community diversity. 2. We examined a radiometrically dated sediment core from the Didachara Mire in the mountains of south-western Georgia (Caucasus) and analysed multiple biological proxies (pollen, fern spores, non-pollen palynomorphs, charcoal, diatoms, chrysophyte cysts, midges, mites and testate amoebae). Numerical techniques, including multivariate ordination, rarefaction, independent splitting and trait analysis, were used to assess the major drivers of changes in community diversity and population stability. Integrated multi-proxy analyses are very rare in the Caucasus, making this a unique record of long-term ecological change in a global biodiversity hotspot. 3. Synthesis. Population changes in the terrestrial community coincided primarily with external environmental changes, while populations within the peatland community were affected by both internal and external drivers at different times. In general, our observations accord with theoretical predictions that population increases lead to greater stability and declines lead to instability. Random variation and interspecific competition explain population dynamics that diverged from predictions. Population change and diversity trends were positively correlated in all taxonomic groups, suggesting that population-level instability is greater in more diverse communities, even though diverse communities are themselves more stable. There is a continuing need to confront population theory with long-term data to test the predictive success of theoretical frameworks, thereby improving their ability to predict future change.
- Cycling as a smart and green mode of transport in small touristic citiesPublication . Karanikola, Paraskevi; Panagopoulos, Thomas; Tampakis, Stilianos; Tsantopoulos, GeorgiosCycling as a mode of transport is a low-cost, health-improving way to travel and offers environmental benefits for the cities that promote it. It is only recently, though, with concerns over climate change, pollution, congestion, and obesity among others, that have cities throughout the world have begun to implement policies to promote cycling. In Greece, however, the use of the bicycle is limited. In Preveza, a small touristic city in Northwestern Greece where the use of the bicycle is prominent when compared to other Greek cities, there are efforts to promote cycling. Through the aid of a structured questionnaire, the residents evaluated the suitability of the city for cycling, the existing infrastructure, appropriate education, and behavior of cyclists and drivers. More than half of the residents use bicycles as their transportation and stated that bicycles are an inexpensive way of transport in the city and had the opinion that the state should encourage bicycle use by supporting subvention in bicycle acquisition. Two-thirds of the residents evaluated the cycling facilities of their city as adequate, but unsafe for young cyclists who do not follow the rules of transport. Adult cyclists, in contrast, were more loyal to the code, but stated that drivers did not respect their presence on the roads. This research provides important information on the perceived shortcomings of cycling as a transport mode in Preveza that may be of interest to towns/cities with similar characteristics.
- The lives of others: an interactive installationPublication . António, Rui; Mendes Da Silva, Bruno; Rodrigues, João; Tavares, Mirian“The lives of others” is an interactive audiovisual installation that is based on a voyeuristic approach of the binomial inside / outside and private / public, between the finished product presentable to the public and the mechanism that generates it. This mechanism consisting of physical devices and logical-mathematical instructions usually remains in the private sphere, is the interior of the work that is not seen, which belongs only to the creator / author. “the lives of others” quest for demystify the separation of the visual apparatus and the mechanism that generates this external system, making both visible and bringing to the public sphere the elements usually hidden.
- Thermodynamic fluid equations-of-statePublication . Woodcock, LeslieAs experimental measurements of thermodynamic properties have improved in accuracy, to five or six figures, over the decades, cubic equations that are widely used for modern thermodynamic fluid property data banks require ever-increasing numbers of terms with more fitted parameters. Functional forms with continuity for Gibbs density surface (p,T) which accommodate a critical-point singularity are fundamentally inappropriate in the vicinity of the critical temperature (T-c) and pressure (p(c)) and in the supercritical density mid-range between gas- and liquid-like states. A mesophase, confined within percolation transition loci that bound the gas- and liquid-state by third-order discontinuities in derivatives of the Gibbs energy, has been identified. There is no critical-point singularity at T-c on Gibbs density surface and no continuity of gas and liquid. When appropriate functional forms are used for each state separately, we find that the mesophase pressure functions are linear. The negative and positive deviations, for both gas and liquid states, on either side of the mesophase, are accurately represented by three or four-term virial expansions. All gaseous states require only known virial coefficients, and physical constants belonging to the fluid, i.e., Boyle temperature (T-B), critical temperature (T-c), critical pressure (p(c)) and coexisting densities of gas ((cG)) and liquid ((cL)) along the critical isotherm. A notable finding for simple fluids is that for all gaseous states below T-B, the contribution of the fourth virial term is negligible within experimental uncertainty. Use may be made of a symmetry between gas and liquid states in the state function rigidity (dp/d)(T) to specify lower-order liquid-state coefficients. Preliminary results for selected isotherms and isochores are presented for the exemplary fluids, CO2, argon, water and SF6, with focus on the supercritical mesophase and critical region.
- StemMapper: a curated gene expression database for stem cell lineage analysisPublication . Pinto, Jose P.; Machado, Rui S. R.; Magno, Ramiro; Oliveira, Daniel V.; Machado, Susana; Andrade, Raquel P.; Braganca, Jose; Duarte, Isabel; Futschik, Matthias E.Transcriptomic data have become a fundamental resource for stem cell (SC) biologists as well as for a wider research audience studying SC-related processes such as aging, embryonic development and prevalent diseases including cancer, diabetes and neurodegenerative diseases. Access and analysis of the growing amount of freely available transcriptomics datasets for SCs, however, are not trivial tasks. Here, we present StemMapper, a manually curated gene expression database and comprehensive resource for SC research, built on integrated data for different lineages of human and mouse SCs. It is based on careful selection, standardized processing and stringent quality control of relevant transcriptomics datasets to minimize artefacts, and includes currently over 960 transcriptomes covering a broad range of SC types. Each of the integrated datasets was individually inspected andmanually curated. StemMapper's user-friendly interface enables fast querying, comparison, and interactive visualization of quality-controlled SC gene expression data in a comprehensive manner. A proof-of-principle analysis discovering novel putative astrocyte/neural SC lineage markers exemplifies the utility of the integrated data resource. We believe that StemMapper can open the way for new insights and advances in SC research by greatly simplifying the access and analysis of SC transcriptomic data.
- Empowerment, stress vulnerability and burnout among portuguese nursing staffPublication . Orgambidez-Ramos, Alejandro; Borrego-Ales, Yolanda; Ruiz-Frutos, CarlosThe work environment in Portuguese hospitals, characterized by economic cutbacks, can lead to higher levels of burnout experienced by nursing staff. Furthermore, vulnerability to stress can negatively affect the perception of burnout in the workplace. However, structural empowerment is an organizational process that can prevent and decrease burnout among nurses. Consequently, the aim of the study was to examine to what extent structural empowerment and vulnerability to stress can play a predictive role in core burnout in a sample of Portuguese nurses. A convenience sample of 297 nursing staff members from Portuguese hospitals was used in this study. Core burnout was negatively and significantly related to all the dimensions of structural empowerment, and it was positively and significantly related to vulnerability to stress. Regression models showed that core burnout was significantly predicted by access to funds, access to opportunities and vulnerability to stress. Organizational administrations must make every effort in designing interventions focused on structural empowerment, as well as interventions focused on individual interventions that enhance skills for coping with stress.
- In vitro and in silico approaches to appraise Polygonum maritimum L. as a source of innovative products with anti-ageing potentialPublication . Rodrigues, Maria Joao; Slusarczyk, Sylwester; Pecio, Łukasz; Matkowski, Adam; Salmas, Ramin Ekhteiari; Durdagi, Serdar; Pereira, Catarina; Varela, J.; Barreira, Luísa; Custódio, LuísaDifferent Polygonum species have in vitro neuroprotective properties and are traditionally used for their anti-ageing benefits. In this context this work explored for the first time P. maritimum (sea knotgrass) as a potential source of natural products with industrial application as cognitive enhancers with anti-ageing potential. For that purpose methanol and dichloromethane extracts were prepared from leaves and roots of that species and evaluated for in vitro neuroprotective effects through the inhibition on acetyl- (AChE) and butyrylcholinesterase (BuChE), protection against hydrogen peroxide (H2O2)-induced cytoxicity on neuroblastoma cells and lipopolysaccharide (LPS)-induced neuroinflammation on microglia cells. The extracts were chemically characterized by ultra-high-pressure liquid chromatography (UHPLC) coupled to tandem mass spectrometry (MS/MS) and docking studies were performed on the identified compounds. Methanol extracts had the highest activity in AChE (leaves: IC50 = 0.27 mg/mL; roots: IC50 = 0.17 mg/mL) and BuChE (leaves: IC50 = 0.62 mg/mL; roots: IC50 = 0.61 mg/mL) inhibition, as well as reduction of nitric oxide (NO) production in LPS-treated microglia (leaves: IC50 = 4.17 μg/mL; roots: IC50 = 9.95 μg/mL). Methanol extracts prevented oxidative stress-induced cytotoxicity in SH-SY5Y cells when applied simultaneously with H2O2, whereas cells pre-treated with the dichloromethane extracts had increased viability. Fifteen flavonoids were identified and showed favorable binding energies to AChE and BuChE binding pockets. These data suggests P. maritimum as a promising source of natural products and/or molecules with cognitive enhancement and anti-ageing properties.
- Habituation and conditioning in gilthead sea bream (Sparus aurata): effects of aversive stimuli, reward and social hierarchiesPublication . Folkedal, Ole; Ferno, Anders; Nederlof, Marit A. J.; Fosseidengen, Jan E.; Cerqueira, Marco; Olsen, Rolf E.; Nilsson, JonatanTo tailor the farming environment to a fish species, we should understand the species-specific responses to stimuli, including the degree of adaption and learning. Groups of gilthead sea bream were given a delay Pavlovian conditioning regime using a conditioning stimulus (CS) of light flashes signalling arrival of food. Controls were exposed to light flashes unrelated to feeding. Fish in both treatments showed an initial fear response of moving away from the CS combined with reduced swimming speed. In subsequent trials, the Control fish largely habituated the fleeing response but sustained to respond by reducing the swimming speed. The Conditioning fish also stopped to escape from the CS, but opposed to the Control group they gradually increased their swimming speed in response to the CS. In addition, the number of fish in the feeding/CS area increased and became similar to basal level after around 16 trials. A small and variable proportion of the fish displayed black vertical bands on their body and territorial behaviour, and a social hierarchy could interfere with the processes of habituation and conditioning. The swimming speed of the fish increased with number of dark individuals, but this was not found during the CS and the light stimulus thus seemed to overrule the effect of territorial behaviour. The persistent negative response to light flashes in the Control suggests that fish seemingly adapted to repetitive stressors are still in a state of alertness. The change in the response to light shows the potential for rewarding aversive stimuli to reduce stress.