Hotspots de biodiversidade genética em florestas marinhas

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Oceanographic connectivity explains the intra-specific diversity of mangrove forests at global scales

Publication . Gouvêa, Lidiane; Fragkopoulou, Eliza; Cavanaugh, Kyle; Serrao, Ester; Araújo, Miguel B.; Costello, Mark John; Westergerling, E. H. Taraneh; Assis, Jorge

The distribution of mangrove intra-specific biodiversity can be structured by historical demographic processes that enhance or limit effective population sizes. Oceanographic connectivity (OC) may further structure intra-specific biodiversity by preserving or diluting the genetic signatures of historical changes. Despite its relevance for biogeography and evolution, the role of oceanographic connectivity in structuring the distribution of mangrove's genetic diversity has not been addressed at global scale. Here we ask whether connectivity mediated by ocean currents explains the intra-specific diversity of mangroves. A comprehensive dataset of population genetic differentiation was compiled from the literature. Multigenerational connectivity and population centrality indices were estimated with biophysical modeling coupled with network analyses. The variability explained in genetic differentiation was tested with competitive regression models built upon classical isolation-by-distance (IBD) models considering geographic distance. We show that oceanographic connectivity can explain the genetic differentiation of mangrove populations regardless of the species, region, and genetic marker (significant regression models in 95% of cases, with an average R-square of 0.44 +/- 0.23 and Person's correlation of 0.65 +/- 0.17), systematically improving IBD models. Centrality indices, providing information on important stepping-stone sites between biogeographic regions, were also important in explaining differentiation (R-square improvement of 0.06 +/- 0.07, up to 0.42). We further show that ocean currents produce skewed dispersal kernels for mangroves, highlighting the role of rare long-distance dispersal events responsible for histori- cal settlements. Overall, we demonstrate the role of oceanographic connectivity in structuring mangrove intra-specific diversity. Our findings are critical for mangroves' biogeography and evolution, but also for management strategies considering climate change and genetic biodiversity conservation.

2023Journal article

Open Access

Global impacts of projected climate changes on the extent and aboveground biomass of mangrove forests

Publication . Gouvêa, Lidiane; A, Serrão; Cavanaugh, Kyle; Gurgel, Carlos F. D.; Horta, Paulo A.; Assis, Jorge

Aim: Over the past 50 years, anthropogenic activities have led to the disappearance of approximately one-third of the world's mangrove forests and their associated ecosystem services. The synergetic combined effect of projected climate change is likely to further impact mangroves in the years to come, whether by range expansions associated with warming at higher latitudes or large-scale diebacks linked to severe droughts. We provide an estimate of future changes in the extent and aboveground biomass (AGB) of mangrove forests at global scales by considering contrasting Representative Concentration Pathway scenarios (decade 2090-2100 under RCP 2.6 in line with the Paris Agreement expectations, and RCP 8.5 of higher emissions). Location: Global. Methods: Boosted regression trees fitted occurrence and AGB of mangroves against high-resolution biologically meaningful data on air temperature, precipitation, wave energy, slope and distance to river Deltas. Results: On the global scale, models produced for present-day conditions retrieved high accuracy scores and estimated a total area of 12,780,356 ha and overall biomass of 2.29 Pg, in line with previous estimates. Model projections showed poleward shifts along temperate regions, which translated into comparable gains in total area, regardless of the RCP scenario (area change RCP 2.6: 17.29%; RCP 8.5: 15.77%). However, biomass changes were dependent on the emission scenario considered, remaining stable or even increasing under RCP 2.6, or undergoing severe losses across tropical regions under RCP 8.5 (overall biomass change RCP 2.6: 12.97%; RCP 8.5: -11.51%). Such losses were particularly aggravated in countries located in the Tropical Atlantic and Eastern Pacific, and the Western and Eastern Indo-Pacific regions (regions with losses above similar to 20% in overall biomass). Conclusions: Our global estimates highlight the potential effect of future climate changes on mangrove forests and how broad compliance with the Paris Agreement may counteract severe trajectories of loss. The projections made, also provided at the country level, serve as new baselines to evaluate changes in mangrove carbon sequestration and ecosystem services, strongly supporting policy-making and management directives, as well as to guide restoration actions considering potential future changes in niche availability.

2022Journal article

Open Access

Ocean currents shape the genetic structure of a kelp in southwestern Africa

Publication . Assis, Jorge; Neiva, J.; Bolton, John J.; Rothman, Mark D.; Gouveia, Licínia; Paulino, Cristina; Mohdnasir, Hasliza; Anderson, Robert J.; Reddy, Maggie M.; Kandjengo, Lineekela; Kreiner, Anja; Pearson, Gareth; Serrao, Ester

Aim Drivers of extant population genetic structure include past climate-driven range shifts and vicariant events, as well as gene flow mediated by dispersal and habitat continuity. Their integration as alternative or complementary drivers is often missing or incomplete, potentially overlooking relevant processes and time scales. Here we ask whether it is the imprint of past range shifts or habitat connectivity driven by oceanographic transport that best explain genetic structure in a poorly understood model, a forest-forming African kelp. Location Southwestern coast of Africa (Benguela current region). Taxon Laminaria pallida. Methods We estimated genetic variability along the species distributional range using 14 microsatellite markers. This genetic variability was compared to estimates of past range shifts derived from species distribution modelling for the Last Glacial Maximum (LGM), the mid-Holocene (MH) and the present, and estimates of habitat connectivity derived from oceanographic biophysical modelling. Results The species is structured in two clusters, a southern cluster with much richer (allelic richness A: 10.40 +/- 0.33) and unique (private alleles PA: 56.69 +/- 4.05) genetic diversity, and a northern cluster (A: 4.75 +/- 0.17; PA: 6.70 +/- 1.45). These clusters matched well-known biogeographical regions and their transition coincided with a dispersal barrier formed by upwelled offshore transport. No major range shifts or vicariant events were hindcasted along the present range, suggesting population stability from the LGM to the present. Main conclusions Habitat connectivity, rather than past range shifts, explains the extant population structure. Future environmental requirements of the species along the Benguela upwelling system are projected to persist or even intensify, likely preserving the observed genetic patterns for the years to come. Yet, the differentiation and endemicity between clusters, and the isolation structured by the regional oceanography, implies high conservation value for genetic biodiversity, and even more if considering the ecological, social and economic services provided by kelp forests.

2022Journal article

Open Access

Red, gold and green: microbial contribution of Rhodophyta and other Algae to Green Turtle (Chelonia mydas) Gut Microbiome

Publication . Díaz-Abad, Lucía; Bacco-Mannina, Natassia; Miguel Madeira, Fernando; Serrao, Ester; Regalla, Aissa; Patrício, Ana R.; Rodrigues Frade, Pedro

The fitness of the endangered green sea turtle (Chelonia mydas) may be strongly affected by its gut microbiome, as microbes play important roles in host nutrition and health. This study aimed at establishing environmental microbial baselines that can be used to assess turtle health under altered future conditions. We characterized the microbiome associated with the gastrointestinal tract of green turtles from Guinea Bissau in different life stages and associated with their food items, using 16S rRNA metabarcoding. We found that the most abundant (% relative abundance) bacterial phyla across the gastrointestinal sections were Proteobacteria (68.1 ± 13.9% “amplicon sequence variants”, ASVs), Bacteroidetes (15.1 ± 10.1%) and Firmicutes (14.7 ± 21.7%). Additionally, we found the presence of two red algae bacterial indicator ASVs (the Alphaproteobacteria Brucella pinnipedialis with 75 ± 0% and a Gammaproteobacteria identified as methanotrophic endosymbiont of Bathymodiolus, with <1%) in cloacal compartments, along with six bacterial ASVs shared only between cloacal and local environmental red algae samples. We corroborate previous results demonstrating that green turtles fed on red algae (but, to a lower extent, also seagrass and brown algae), thus, acquiring microbial components that potentially aid them digest these food items. This study is a foundation for better understanding the microbial composition of sea turtle digestive tracts.

2022-10-08Journal article

Open Access

Development of tools to rapidly identify cryptic species and characterize their genetic diversity in different European kelp species

Publication . Mauger, Stéphane; Fouqueau, Louise; Avia, Komlan; Reynes, Lauric; Serrao, Ester; Neiva, J.; Valero, Myriam

Marine ecosystems formed by kelp forests are severely threatened by global change and local coastline disturbances in many regions. In order to take appropriate conservation, mitigation, and restoration actions, it is crucial to identify the most diverse populations which could serve as a “reservoir” of genetic diversity. This requires the development of specifc tools, such as microsatellite markers to investigate the level and spatial distribution of genetic diversity. Here, we tested new polymorphic microsatellite loci from the genome of the kelp, Laminaria digitata, and tested them for cross-amplifcation and polymorphism in four closely related congeneric species (Laminaria hyperborea, Laminaria ochroleuca, Laminaria rodriguezii, and Laminaria pallida). Adding these 20 new microsatellite loci to the ten L. digitata loci previously developed by Billot et al. (Mol Ecol 7:1778-1780, 1998) and Brenan et al. (J R Soc Interface 11:1-12, 2014) and to the ten L. ochroleuca loci previ ously developed by Coelho et al. (Conserv Genet Resource 6:949-950, 2014), we retained a total of 30 polymorphic loci for L. digitata, 21 for L. hyperborea, 16 for L ochroleuca, 18 for L. rodriguezii, and 12 for L. pallida. These markers have been tested for the frst time in the last two species. As predicted, the proportion of markers that cross-amplifed between species decreased with increasing genetic distance. In addition, as problems of species identifcation were reported in this family, mainly between L. digitata and Hedophyllum nigripes, but also between L. digitata, L. hyperborea, and L. ochroleuca in areas where their range distributions overlap, we report a rapid PCR identifcation method based on species-specifc COI mitochondrial primers that allows these four species of kelp to be rapidly distinguished.

2021-10Journal article

Open Access