Center for Electronics, Optoelectronics and Telecommunications

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Spectral analysis, biocompounds, and physiological assessment of Cork Oak leaves: unveiling the interaction with Phytophthora cinnamomi and beyond

Publication . Guerra, Rui; Pires, Rosa; Brazio, António; Cavaco, Ana Margarida; Schütz, Gabriela; Coelho, Ana Cristina

The cork oak tree (Quercus suber L.) symbolizes the Montado landscape in Portugal and is a central element in the country’s social and economic history. In recent decades, the loss of thousands of cork oaks has been reported, revealing the ongoing decline of these agroforestry ecosystems. This emblematic tree of the Mediterranean Basin is host to the soil-born root pathogen Phytophthora cinnamomi, an active cork oak decline driver. In this framework, the early diagnosis of trees infected by the oomycete by non-invasive methods should contribute to the sustainable management of cork oak ecosystems, which motivated this work. Gas exchange and visible/near-infrared (400–1100 nm) reflectance spectroscopy measurements were conducted on leaves of both control and P. cinnamomi inoculated plants. These measurements were taken at 63, 78, 91, 126, and 248 days after inoculation. Additionally, at the end of the experiment, biochemical assays of pigments, sugars, and starch were performed. The spectroscopic measurements proved effective in distinguishing between control and inoculated plants, while the standard gas exchange and biochemistry data did not exhibit clear differences between the groups. The spectral data were examined both daily and globally, utilizing the PARAFAC method applied to a three-way array of samples × wavelengths × days. The separation of the two plant groups was attributed to variations in water content (4v (O−H)); shifts in the spectra red edge; and structural modifications in the epidermal layer and leaves’ mesophyll. These spectral signatures can assist in the field identification of cork oaks that are interacting with P. cinnamomi.

2023-08-17Journal article

Open access

A distributed CoRE-Based resource synchronization mechanism

Publication . Mazayev, A.; Correia, Noélia

Representational state transfer (REST) application programming interfaces and event processing are the cornerstone of the dynamic Internet of Things. While the former is required for device interoperability, the latter is important for autonomous and responsive systems. In recent years, both topics have received a lot of attention and have been drastically changing due to the emergence of new applications, which end up working inefficiently with current standards and architectures. More recently, event processing started to move down from the top (cloud) to bottom (edge devices). At the same time, the Internet Engineering Task Force, which normally solves low-layer protocol-related problems, has also started looking at event processing and resource synchronization from a bottom-up perspective. This article explores the intersection of these efforts by making an in-depth overview of currently existing standards, and Internet drafts, that allow building complex event processing chains. Next, a new reusable and scalable event processing mechanism, which can be distributed across multiple end-devices, is introduced. Its optimal distribution across end-devices is mathematically addressed, and results confirm its effectiveness.

2020-05Journal article

Restricted access

Ripening assessment of ‘Ortanique’ (Citrus reticulata Blanco x Citrus sinensis (L) Osbeck) on tree by SW-NIR reflectance spectroscopy-based calibration models

Publication . Pires, Rosa; Guerra, Rui Manuel Farinha das Neves; Cruz, Sandra; Antunes, MDC; Brazio, António; Afonso, Andreia M.; Daniel, Mariana; Panagopoulos, Thomas; Gonçalves, Isabel; Cavaco, Ana M.

The aim of this study was the non-destructive assessment of ‘Ortanique’ (Citrus reticulata Blanco x Citrus sinensis (L) Osbeck) ripening, based on the prediction of internal quality attributes (IQA) by short-wave near-infrared reflectance spectroscopy (SW-NIRS) calibration models. Spectra from fruit of 50 trees located in two different orchards, were acquired on tree using a customized portable visible near-infrared (vis-NIR) system. Partial least squares (PLS) was used to build the various IQA calibration models. The models were tested through internal validation (IV) and external validation (EV). Generally, the IV results were always superior to those of EV: regarding IV, a high regression coefficient (R2) and low root mean square error of prediction (RMSEP) were achieved, revealing a good predictive performance for juice pH (R2 = 0.80; RMSEP = 0.10; SDR = 2.23), soluble solids content (SSC) (R2 = 0.79; RMSEP = 0.75 %; SDR = 2.27), titratable acidity (TA) (R2 = 0.73; RMSEP = 0.24 % citric acid; SDR = 1.94) and the maturation index (MI) (R2 = 0.80; RMSEP = 1.38; SDR = 2.2). The best EV predictions were obtained for TA (R2 = 0.69; RMSEP = 0.38 % citric acid; SDR = 1.24), and MI (R2 = 0.69; RMSEP = 2.07; SDR = 1.49). Calibration models for glucose, fructose and sucrose showed medium-coarse predictions for both validation strategies. A detailed investigation of MI models was performed, to understand the causes of their poor EV results. In the context of EV, model updating strategies were explored by using some validation samples to improve the calibration model. The methods of bias correction and spiking were tested, showing a clear improvement in the predictions.

2022-01Journal article

Open access

SpectraNet–53: A deep residual learning architecture for predicting soluble solids content with VIS–NIR spectroscopy

Publication . A. Martins, J.; Guerra, Rui Manuel Farinha das Neves; Pires, R.; Antunes, M.D.; Panagopoulos, T.; Brázio, A.; Afonso, A.M.; Silva, L.; Lucas, M.R.; Cavaco, A.M.

This work presents a new deep learning architecture, SpectraNet-53, for quantitative analysis of fruit spectra, optimized for predicting Soluble Solids Content (SSC, in Brix). The novelty of this approach resides in being an architecture trainable on a very small dataset, while keeping a performance level on-par or above Partial Least Squares (PLS), a time-proven machine learning method in the field of spectroscopy. SpectraNet-53 performance is assessed by determining the SSC of 616 Citrus sinensi L. Osbeck 'Newhall' oranges, from two Algarve (Portugal) orchards, spanning two consecutive years, and under different edaphoclimatic conditions. This dataset consists of short-wave near-infrared spectroscopic (SW-NIRS) data, and was acquired with a portable spectrometer, in the visible to near infrared region, on-tree and without temperature equalization. SpectraNet-53 results are compared to a similar state-of-the-art architecture, DeepSpectra, as well as PLS, and thoroughly assessed on 15 internal validation sets (where the training and test data were sampled from the same orchard or year) and on 28 external validation sets (training/test data sampled from different orchards/years). SpectraNet-53 was able to achieve better performance than DeepSpectra and PLS in several metrics, and is especially robust to training overfit. For external validation results, on average, SpectraNet-53 was 3.1% better than PLS on RMSEP (1.16 vs. 1.20 Brix), 11.6% better in SDR (1.22 vs. 1.10), and 28.0% better in R2 (0.40 vs. 0.31).

2022-04Journal article

Open access

On load balancing via switch migration in software-defined networking

Publication . Correia, Noélia; Al-Tam, Faroq

Switch-controller assignment is an essential task in multi-controller software-deﬁned networking. Static assignments are not practical because network dynamics are complex and difﬁcult to predetermine. Since network load varies both in space and time, the mapping of switches to controllers should be adaptive to sudden changes in the network. To that end, switch migration plays an important role in maintaining dynamic switch-controller mapping. Migrating switches from overloaded to underloaded controllers brings ﬂexibility and adaptability to the network but, at the same time, deciding which switches should be migrated to which controllers, while maintaining a balanced load in the network, is a challenging task. This work presents a heuristic approach with solution shaking to solve the switch migration problem. Shift and swap moves are incorporated within a search scheme. Every move is evaluated by how much beneﬁtitwillgivetoboththeimmigrationandoutmigrationcontrollers.Theexperimentalresultsshowthat theproposedapproachisabletooutweighthestate-of-artapproaches,andimprovetheloadbalancingresults up to≈ 14% in some scenarios when compared to the most recent approach. In addition, the results show that the proposed work is more robust to controller failure than the state-of-art methods.

2019-07-18Journal article

Open access