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A transcriptome resource for the copepod Calanus glacialis across a range of culture temperatures

2015-10Journal article Open access
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dc.contributor.authorA Ramos, Ana
dc.contributor.authorWeydmann, A.
dc.contributor.authorCox, C. J.
dc.contributor.authorCanario, A.V.M.
dc.contributor.authorA, Serrão
dc.contributor.authorPearson, G. A.
dc.date.accessioned2018-12-07T14:58:03Z
dc.date.available2018-12-07T14:58:03Z
dc.date.issued2015-10
dc.description.abstractThe copepod Calanus glacialis plays a key role in the Arctic pelagic ecosystem. Despite its ecological importance and ongoing climate changes, limited knowledge at the genomic level has hindered the understanding of the molecular processes underlying environmental stress responses and ecological adaptation. Transcriptome data was generated from an experiment with C glacialis copepodite (CV) subjected to five different temperatures. We obtained a total of 512,352 high-quality 454 pyrosequencing reads, which were assembled into 55,562 contigs distributed in 128 KEGG pathways. Functional analysis revealed numerous genes related to diverse biological functions and processes, including members of all major conserved signaling pathways. Comparative analysis of acclimated individuals to experimental temperatures has provided information about gene variations observed in several pathways (e.g. genes involved in energy, lipid and amino acid metabolism were shown to be down-regulated with increasing temperatures). These mRNA sequence resources will facilitate further studies on genomics and physiology-driven molecular processes in C glacialis and related species. (C) 2015 Elsevier B.V. All rights reserved.
dc.description.sponsorshipEuropean Commission [FP7-ENV-2008-1-226248]; Polish National Science Centre [2011/03/B/NZ8/02876]; Portuguese Science and Technology Foundation (FCT) [FCT PTDC/MAR/72630]; FCT [SFRH/BPD/64174/2009]
dc.description.versioninfo:eu-repo/semantics/publishedVersion
dc.identifier.doi10.1016/j.margen.2015.03.014
dc.identifier.issn1874-7787
dc.identifier.issn1876-7478
dc.identifier.urihttp://hdl.handle.net/10400.1/11836
dc.language.isoeng
dc.peerreviewedyes
dc.publisherElsevier
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subjectGene-expression
dc.subjectClimate-change
dc.subjectFinmarchicus
dc.titleA transcriptome resource for the copepod Calanus glacialis across a range of culture temperatures
dc.typejournal article
dspace.entity.typePublication
oaire.citation.endPage29
oaire.citation.startPage27
oaire.citation.titleMarine Genomics
oaire.citation.volume23
person.familyNameRamos
person.familyNameCox
person.familyNameCanario
person.familyNameSerrao
person.familyNamePearson
person.givenNameAna
person.givenNameCymon
person.givenNameAdelino
person.givenNameEster A.
person.givenNameGareth Anthony
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rcaap.rightsopenAccess
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