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Establishing the ELIXIR microbiome community

2025-09-08Artigo científico Acesso aberto
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datacite.subject.sdg03:Saúde de Qualidade
datacite.subject.sdg09:Indústria, Inovação e Infraestruturas
datacite.subject.sdg17:Parcerias para a Implementação dos Objetivos
dc.contributor.authorFinn, Robert D.
dc.contributor.authorBalech, Bachir
dc.contributor.authorBurgin, Josephine
dc.contributor.authorChua, Physilia
dc.contributor.authorCorre, Erwan
dc.contributor.authorCox, Cymon
dc.contributor.authorDonati, Claudio
dc.contributor.authorSantos, Vitor Martins dos
dc.contributor.authorFosso, Bruno
dc.contributor.authorHancock, John
dc.contributor.authorHeil, Katharina F.
dc.contributor.authorIshaque, Naveed
dc.contributor.authorKale, Varsha
dc.contributor.authorKunath, Benoit J.
dc.contributor.authorMédigue, Claudine
dc.contributor.authorNogueira, Teresa
dc.contributor.authorPafilis, Evangelos
dc.contributor.authorPesole, Graziano
dc.contributor.authorRichardson, Lorna
dc.contributor.authorSantamaria, Monica
dc.contributor.authorStrepis, Nikolaos
dc.contributor.authorBossche, Tim Van Den
dc.contributor.authorVizcaíno, Juan Antonio
dc.contributor.authorZafeiropoulos, Haris
dc.contributor.authorWillassen, Nils P.
dc.contributor.authorPelletier, Eric
dc.contributor.authorBatut, Bérénice
dc.date.accessioned2026-05-11T18:47:54Z
dc.date.available2026-05-11T18:47:54Z
dc.date.issued2025-09-08
dc.description.abstractMicrobiome research has grown substantially over the past decade in terms of the range of biomes sampled, identified taxa, and the volume of data derived from the samples. In particular, experimental approaches such as metagenomics, metabarcoding, metatranscriptomics and metaproteomics have provided profound insights into the vast, hitherto unknown, microbial biodiversity. The ELIXIR Marine Metagenomics Community, initiated amongst researchers focusing on marine microbiomes, has concentrated on promoting standards around microbiome-derived sequence analysis, as well as understanding the gaps in methods and reference databases, and identifying solutions to the computational overheads of performing such analyses. Nevertheless, the methods used and the challenges faced are not confined to marine microbiome studies, but are broadly applicable to other biomes. Thus, expanding this Marine Metagenomics Community to a more inclusive ELIXIR Microbiome Community will enable it to encompass a broader range of biomes and link expertise across ‘omics technologies. Furthermore, engaging with a large number of researchers will improve the efficiency and sustainability of bioinformatics infrastructure and resources for microbiome research (standards, data, tools, workflows, training), which will enable a deeper understanding of the function and taxonomic composition of the different microbial communities.eng
dc.description.sponsorship1286824N; 676559; BB/V01868X/1; C19/BM/13684739; PIR01_00017; IR0000010
dc.identifier.doi10.12688/f1000research.144515.2
dc.identifier.issn2046-1402
dc.identifier.urihttp://hdl.handle.net/10400.1/28924
dc.language.isoeng
dc.peerreviewedyes
dc.publisherF1000 Research Ltd
dc.relationAlgarve Centre for Marine Sciences
dc.relationAlgarve Centre for Marine Sciences
dc.relationCentre for Marine and Environmental Research
dc.relation.ispartofF1000Research
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subjectMicrobiome
dc.subjectELIXIR community
dc.subjectWhite paper
dc.titleEstablishing the ELIXIR microbiome communityeng
dc.typejournal article
dspace.entity.typePublication
oaire.awardNumberUIDB/04326/2020
oaire.awardNumberUIDP/04326/2020
oaire.awardNumberLA/P/0101/2020
oaire.awardTitleAlgarve Centre for Marine Sciences
oaire.awardTitleAlgarve Centre for Marine Sciences
oaire.awardTitleCentre for Marine and Environmental Research
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04326%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDP%2F04326%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/LA%2FP%2F0101%2F2020/PT
oaire.citation.startPage50
oaire.citation.titleF1000Research
oaire.citation.volume13
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
oaire.versionhttp://purl.org/coar/version/c_970fb48d4fbd8a85
person.familyNameCox
person.givenNameCymon
person.identifier.ciencia-id6B15-9771-1D04
person.identifier.orcid0000-0002-4927-979X
person.identifier.ridD-1303-2012
person.identifier.scopus-author-id7402112716
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
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