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Core microbiome profiles and their modification by environmental, biological, and rearing factors in aquaculture hatcheries

2023-08Journal article Open access
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dc.contributor.authorNajafpour, Babak
dc.contributor.authorPinto, Patricia IS
dc.contributor.authorSanz, Eric Climent
dc.contributor.authorMartinez-Blanch, Juan F.
dc.contributor.authorCanario, Adelino
dc.contributor.authorMoutou, Katerina A.
dc.contributor.authorPower, Deborah
dc.date.accessioned2023-09-26T13:46:34Z
dc.date.available2023-09-26T13:46:34Z
dc.date.issued2023-08
dc.description.abstract16S rRNA gene sequencing and bacteria-and genus-specific quantitative PCR was used to profile microbial communities and their associated functions in water, live feed (microalgae, Artemia, and rotifer), and European sea bass and gilthead sea bream larvae from hatcheries in Greece and Italy. The transfer to larvae of genus containing potential pathogens of fish was more likely with Artemia and rotifer than with microalgae or water, irrespective of geographic location. The presence of potentially pathogenic bacteria (Vibrio and Pseudoalter-omonas) in the core microbiota of water, live feed, and fish larvae, the enrichment of different bacterial resistance pathways and biofilm formation, and the overall low beneficial bacteria load during larval ontogeny emphasizes the risk for disease outbreaks. The present data characterizing microbiota in commercial aquaculture hatcheries provides a baseline for the design of strategies to manage disease and to model or remediate potential adverse environmental impacts.pt_PT
dc.description.sponsorshipEuropean Union (EU) H2020-SFS2016-2-727610; UID/Multi/04326/2021pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.doi10.1016/j.marpolbul.2023.115218pt_PT
dc.identifier.eissn1879-3363
dc.identifier.urihttp://hdl.handle.net/10400.1/20014
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherElsevierpt_PT
dc.relationNot Available
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/4.0/pt_PT
dc.subjectHatcherypt_PT
dc.subjectMarine waterpt_PT
dc.subjectLarvaept_PT
dc.subjectMicrobiotapt_PT
dc.subjectOntogenypt_PT
dc.subjectVibriopt_PT
dc.titleCore microbiome profiles and their modification by environmental, biological, and rearing factors in aquaculture hatcheriespt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.awardTitleNot Available
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/DL 57%2F2016/DL 57%2F2016%2FCP1361%2FCT0015/PT
oaire.citation.startPage115218pt_PT
oaire.citation.titleMarine Pollution Bulletinpt_PT
oaire.citation.volume193pt_PT
oaire.fundingStreamDL 57/2016
person.familyNameNAJAFPOUR
person.familyNamePinto
person.familyNameCanario
person.familyNamePower
person.givenNameBABAK
person.givenNamePatricia IS
person.givenNameAdelino
person.givenNameDeborah Mary
person.identifier643457
person.identifier143624
person.identifier.ciencia-idE51D-5CCB-B1C6
person.identifier.ciencia-id1F1E-D3B3-F804
person.identifier.ciencia-id891A-8A44-3CAE
person.identifier.orcid0000-0003-2977-482X
person.identifier.orcid0000-0001-7854-3898
person.identifier.orcid0000-0002-6244-6468
person.identifier.orcid0000-0003-1366-0246
person.identifier.ridM-3817-2013
person.identifier.ridC-7942-2009
person.identifier.scopus-author-id10240774300
person.identifier.scopus-author-id56568523700
person.identifier.scopus-author-id7101806760
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsopenAccesspt_PT
rcaap.typearticlept_PT
relation.isAuthorOfPublication8f1689bd-f300-49d5-9d7a-5ad8ccbe51af
relation.isAuthorOfPublication64bc526e-5281-44e5-91eb-5743436109f9
relation.isAuthorOfPublication5f6e51ee-9113-469e-8b9e-f30f2d452521
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