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Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis

2022-11Journal article Open Access
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dc.contributor.authorCoelho, Márcio
dc.contributor.authorLedoux, Jean-Baptiste
dc.contributor.authorBoavida, Joana
dc.contributor.authorPaulo, Diogo
dc.contributor.authorGómez-Gras, Daniel
dc.contributor.authorBensoussan, Nathaniel
dc.contributor.authorLópez-Sendino, Paula
dc.contributor.authorCerrano, Carlo
dc.contributor.authorKipson, Silvija
dc.contributor.authorBakran-Petricioli, Tatjana
dc.contributor.authorGarrabou, Joaquim
dc.contributor.authorA, Serrão
dc.contributor.authorPearson, Gareth
dc.date.accessioned2023-01-31T13:38:03Z
dc.date.available2023-01-31T13:38:03Z
dc.date.issued2022-11
dc.description.abstractThe Gray's sea fan, Paramuricea grayi (Johnson, 1861), typically inhabits deep littoral and circalittoral habitats of the eastern temperate and tropical Atlantic Ocean. Along the Iberian Peninsula, where P. grayi is a dominant constituent of circalittoral coral gardens, two segregating lineages (yellow and purple morphotypes) were recently identified using single-copy nuclear orthologues. The mitochondrial genomes of 9 P. grayi individuals covering both color morphotypes were assembled from RNA-seq data, using samples collected at three sites in southern (Sagres and Tavira) and western (Cape Espichel) Portugal. The complete circular mitogenome is 18,668 bp in length, has an A + T-rich base composition (62.5%) and contains the 17 genes typically found in Octocorallia: 14 protein-coding genes (atp6, atp8, cob, cox1-3, mt-mutS, nad1-6, and nad4L), the small and large subunit rRNAs (rns and rnl), and one transfer RNA (trnM). The mitogenomes were nearly identical for all specimens, though we identified a noteworthy polymorphism (two SNPs 9 bp apart) in the mt-mutS of one purple individual that is shared with the sister species P. clavata. The mitogenomes of the two species have a pairwise sequence identity of 99.0%, with nad6 and mt-mutS having the highest rates of non-synonymous substitutions.pt_PT
dc.description.sponsorshipLA/P/0101/2020
dc.description.sponsorshipDivRestore/0013/2020
dc.description.sponsorshipMAR-01.04.02-FEAMP-0018
dc.description.sponsorshipFA_06_2017_045
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.doi10.1080/23802359.2022.2143246pt_PT
dc.identifier.eissn2380-2359
dc.identifier.urihttp://hdl.handle.net/10400.1/18975
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherTaylor & Francispt_PT
dc.relationAlgarve Centre for Marine Sciences
dc.relationAlgarve Centre for Marine Sciences
dc.relationMarine Ecosystem Restoration in Changing European Seas
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/pt_PT
dc.subjectOctocoralliapt_PT
dc.subjectGorgonianpt_PT
dc.subjectGray's sea fanpt_PT
dc.subjectMitogenomept_PT
dc.subjectRNA-seqpt_PT
dc.titleComplete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysispt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.awardTitleAlgarve Centre for Marine Sciences
oaire.awardTitleAlgarve Centre for Marine Sciences
oaire.awardTitleMarine Ecosystem Restoration in Changing European Seas
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04326%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDP%2F04326%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/PTDC%2FBIA-CBI%2F6515%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/EC/H2020/689518/EU
oaire.citation.endPage1988pt_PT
oaire.citation.issue11pt_PT
oaire.citation.startPage1985pt_PT
oaire.citation.titleMitochondrial DNA Part Bpt_PT
oaire.citation.volume7pt_PT
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream3599-PPCDT
oaire.fundingStreamH2020
person.familyNameA. G. Coelho
person.familyNamePaulo
person.familyNameSerrao
person.familyNamePearson
person.givenNameMárcio
person.givenNameDiogo
person.givenNameEster A.
person.givenNameGareth Anthony
person.identifierC-6686-2012
person.identifier113536
person.identifier.ciencia-idF415-B297-7821
person.identifier.ciencia-idD31B-CCC9-EDBB
person.identifier.ciencia-id5B13-B26E-B1EC
person.identifier.ciencia-id3315-9919-1A52
person.identifier.orcid0000-0001-7832-5241
person.identifier.orcid0000-0001-9061-6850
person.identifier.orcid0000-0003-1316-658X
person.identifier.orcid0000-0002-0768-464X
person.identifier.ridE-7681-2016
person.identifier.ridM-7522-2013
person.identifier.ridJ-3911-2013
person.identifier.scopus-author-id7004093604
person.identifier.scopus-author-id55916875600
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100008530
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameEuropean Commission
rcaap.rightsopenAccesspt_PT
rcaap.typearticlept_PT
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