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MsatAllele_1.0: An R package to visualize the binning of microsatellite Alleles

2009-06Journal article Open access
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dc.contributor.authorAlberto, Filipe
dc.date.accessioned2018-12-07T14:57:53Z
dc.date.available2018-12-07T14:57:53Z
dc.date.issued2009-06
dc.description.abstractMsatAllele is a computer package built on R to visualize and bin the raw microsatellite allele size distributions. The method is based on the creation of an R database with exported files from the open-source electropherogram peak-reading program STRAND. Contrary to other binning programs, in this program, the bin limits are not fixed and are automatically defined by the data stored in the database. Data manipulation and graphical functions allow to 1) visualize raw allele size variation, allowing the detection of potential scoring errors, strange bin distributions, and unexpected spacing between the bins; 2) bin raw fragment sizes and write bin summary statistics for each locus; and 3) export genotype files with the resulting binned data.
dc.description.sponsorshipFundacao para a Ciencia e Tecnologia [SFRH/BPD/14945/2004]; MEGIKELP [PTDC/MAR/65461/2006]
dc.description.versioninfo:eu-repo/semantics/publishedVersion
dc.identifier.doi10.1093/jhered/esn110
dc.identifier.issn0022-1503
dc.identifier.urihttp://hdl.handle.net/10400.1/11751
dc.language.isoeng
dc.peerreviewedyes
dc.publisherOxford Univ Press Inc
dc.relationGENETIC STRUCTURE OF GIANT KELP FORESTS, MACROCYSTIS PYRIFERA, AT THEIR SOUTHERN LIMIT. EVOLUTIONARY CONSEQUENCES OF POPULATION DISCONTINUITY UNDER STRONG SELECTIVE PRESSURE AND HIGH EXTINCTION PROBABILITY
dc.relationMolecular ecology of the giant kelp Macrocystis pyrifera
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.titleMsatAllele_1.0: An R package to visualize the binning of microsatellite Alleles
dc.typejournal article
dspace.entity.typePublication
oaire.awardTitleGENETIC STRUCTURE OF GIANT KELP FORESTS, MACROCYSTIS PYRIFERA, AT THEIR SOUTHERN LIMIT. EVOLUTIONARY CONSEQUENCES OF POPULATION DISCONTINUITY UNDER STRONG SELECTIVE PRESSURE AND HIGH EXTINCTION PROBABILITY
oaire.awardTitleMolecular ecology of the giant kelp Macrocystis pyrifera
oaire.awardURIinfo:eu-repo/grantAgreement/FCT//SFRH%2FBPD%2F14945%2F2004/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/PTDC%2FMAR%2F65461%2F2006/PT
oaire.citation.endPage397
oaire.citation.issue3
oaire.citation.startPage394
oaire.citation.titleJournal of Heredity
oaire.citation.volume100
oaire.fundingStream3599-PPCDT
person.familyNameAlberto
person.givenNameFilipe
person.identifier1488456
person.identifier.ciencia-idBD15-2AC7-8AA3
person.identifier.orcid0000-0003-0593-3240
person.identifier.scopus-author-id6701653422
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsopenAccess
rcaap.typearticle
relation.isAuthorOfPublication4e95893d-e3c7-462f-a897-49bb8999b65b
relation.isAuthorOfPublication.latestForDiscovery4e95893d-e3c7-462f-a897-49bb8999b65b
relation.isProjectOfPublicationc0008150-8eb1-4ded-be52-792be7653d24
relation.isProjectOfPublication024eeee9-7673-47a9-a8fa-823affc18478
relation.isProjectOfPublication.latestForDiscovery024eeee9-7673-47a9-a8fa-823affc18478

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