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Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits

2004-10Journal article Restricted
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dc.contributor.authorLutzoni, F.
dc.contributor.authorKauff, F.
dc.contributor.authorCox, C. J.
dc.contributor.authorMcLaughlin, D.
dc.contributor.authorCelio, G.
dc.contributor.authorDentinger, C.
dc.contributor.authorPadamsee, M.
dc.contributor.authorHibbett, D. S.
dc.contributor.authorJames, T. Y.
dc.contributor.authorBaloch, E.
dc.contributor.authorGrube, M.
dc.contributor.authorReeb, V.
dc.contributor.authorHofstetter, V.
dc.contributor.authorSchoch, C. L.
dc.contributor.authorArnold, A. E.
dc.contributor.authorMiadlikowska, J.
dc.contributor.authorSpatafora, J.
dc.contributor.authorJohnson, D.
dc.contributor.authorHambleton, S.
dc.contributor.authorCrockett, M.
dc.contributor.authorShoemaker, R.
dc.contributor.authorSung, G. -H.
dc.contributor.authorLücking, R.
dc.contributor.authorLumbsch, H. T.
dc.contributor.authorO'Donnell, K.
dc.contributor.authorBinder, M.
dc.contributor.authorDiederich, P.
dc.contributor.authorErtz, D.
dc.contributor.authorGueidan, C.
dc.contributor.authorHansen, K.
dc.contributor.authorHarris, R. C.
dc.contributor.authorHosaka, K.
dc.contributor.authorLim, Y. -W.
dc.contributor.authorMatheny, P. B.
dc.contributor.authorNishida, H.
dc.contributor.authorPfister, D.
dc.contributor.authorRogers, J.
dc.contributor.authorRossman, A.
dc.contributor.authorSchmitt, I.
dc.contributor.authorSipman, H.
dc.contributor.authorStone, J.
dc.contributor.authorSugiyama, J.
dc.contributor.authorYahr, R.
dc.contributor.authorVilgalys, R.
dc.date.accessioned2014-10-24T14:51:37Z
dc.date.available2014-10-24T14:51:37Z
dc.date.issued2004-10
dc.date.updated2014-10-24T09:23:52Z
dc.description.abstractBased on an overview of progress in molecular systematics of the true fungi(Fungi/Eumycota) since 1990, little overlap was found among single-locus data matrices, which explains why no large-scale multilocus phylogenetic analysis had been undertaken to reveal deep relationships among fungi. As part of the project ‘‘Assembling the Fungal Tree of Life’’ (AFTOL), results of four Bayesian analyses are reported with complementary bootstrap assessment of phylogenetic confidence based on (1) a combined two-locus data set (nucSSU and nucLSU rDNA) with 558 species representing all traditionally recognized fungal phyla (Ascomycota, Basidiomycota, Chytridiomycota, Zygomycota) and the Glomeromycota, (2) a combined three-locus data set (nucSSU, nucLSU, and mitSSU rDNA) with 236 species, (3) a combined three-locus data set (nucSSU, nucLSU rDNA, and RPB2) with 157 species, and (4) a combined four-locus data set (nucSSU, nucLSU, mitSSU rDNA, and RPB2) with 103 species. Because of the lack of complementarity among single-locus data sets, the last three analyses included only members of the Ascomycota and Basidiomycota. The four-locus analysis resolved multiple deep relationships within the Ascomycota and Basidiomycota that were not revealed previously or that received only weak support in previous studies. The impact of this newly discovered phylogenetic structure on supraordinal classifications is discussed. Based on these results and reanalysis of subcellular data, current knowledge of the evolution of septal features of fungal hyphae is synthesized, and a preliminary reassessment of ascomal evolution is presented. Based on previously unpublished data and sequences from GenBank, this study provides a phylogenetic synthesis for the Fungi and a framework for future phylogenetic studies on fungi.por
dc.identifier.citationLutzoni, F.; Kauff, F.; Cox, C.J.; McLaughlin, D.; Celio, G.; Dentinger, C.; Padamsee, M.; Hibbett, D.; James, T.Y.; Baloch, E.; Grube, M.; Reeb, V.; Hofstetter, V.; Schoch, C.L.; Arnold, A.E.; Miadlikowska, J.; Spatafora, J.; Johnson, D.; Hambleton, S.; Crockett, M.; Shoemaker, R.; Sung, G.-H.; Lücking, R.; Lumbsch, T.; O\'Donnell, K.; Binder, M.; Diederich, P.; Ertz, D.; Gueidan, C.; Hansen, K.; Harris, R.C.; Hosaka, K.; Lim, Y.-W.; Matheny, B.; Nishida, H.; Pfister, D.; Rogers, J.; Rossman, A.; Schmitt, I.; Sipman, H.; et al.Assembling the fungal tree of life: Progress, classification, and evolution of subcellular traits, American Journal of Botany, 91, 10, 1446-14, 2004.por
dc.identifier.doihttp://dx.doi.org/10.3732/ajb.91.10.1446
dc.identifier.issn0002-9122
dc.identifier.urihttp://hdl.handle.net/10400.1/5509
dc.language.isoengpor
dc.peerreviewedyespor
dc.publisherBotanical Society of America: AJBpor
dc.relation.publisherversionhttp://www.amjbot.org/content/91/10/1446.fullpor
dc.subjectFungal classificationpor
dc.subjectFungal morphology and ultrastructurepor
dc.subjectFungal phylogeneticspor
dc.subjectNuclear small and large subunit ribosomal DNA (nucSSU and nucLSU rDNA)por
dc.titleAssembling the fungal tree of life: progress, classification, and evolution of subcellular traitspor
dc.typejournal article
dspace.entity.typePublication
oaire.citation.endPage1480por
oaire.citation.issue10por
oaire.citation.startPage1446por
oaire.citation.titleAmerican Journal of Botanypor
oaire.citation.volume91por
person.familyNameCox
person.givenNameCymon
person.identifier.ciencia-id6B15-9771-1D04
person.identifier.orcid0000-0002-4927-979X
person.identifier.ridD-1303-2012
person.identifier.scopus-author-id7402112716
rcaap.rightsrestrictedAccesspor
rcaap.typearticlepor
relation.isAuthorOfPublication82c3689c-60b6-440d-9d7b-49e6dbd6861b
relation.isAuthorOfPublication.latestForDiscovery82c3689c-60b6-440d-9d7b-49e6dbd6861b

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