Repository logo
 
Publication

Dataset of the complete mitogenome of the deep-sea sailfin roughshark, Oxynotus paradoxus Frade, 1929

2024-02Journal article Open access
Simple item page
dc.contributor.authorMatos, Ana
dc.contributor.authorGomes-dos-Santos, André
dc.contributor.authorGraça Aranha, Sofia
dc.contributor.authorDias, Ester
dc.contributor.authorVeríssimo, Ana
dc.contributor.authorTeodosio, Maria
dc.contributor.authorFigueiredo, Ivone
dc.contributor.authorCastro, L. Filipe C．
dc.contributor.authorFroufe, Elsa
dc.date.accessioned2024-01-18T13:41:38Z
dc.date.available2024-01-18T13:41:38Z
dc.date.issued2024-02
dc.description.abstractChondrichthyans comprise a diverse group of vertebrate species with extraordinary ecological relevance. Yet, multiple members of this evolutionary lineage are associated with sig-nificant extinction risk. The sailfin roughshark Oxynotus para-doxus is a deep-water benthic shark currently listed as vul-nerable due to population declines in parts of its range. Here we provide the first complete mitochondrial genome of O. paradoxus, comprising also the first record for the genus and family Oxynotidae. These data can facilitate future monitor-ing of the genetic diversity in this and related species. Ge-nomic DNA was extracted from O. paradoxus collected in the eastern North Atlantic off western Portugal (37.59 degrees N, 9.51 degrees W) and sent for Illumina Paired-End (2 x 150 bp) library con-struction and whole genome sequencing on a Novaseq60 0 0 platform. Trimmomatic (version 0.38) was used to remove adapters and MitoZ (version 3.4) to assemble and anno-tate the mitogenome. This mitogenome with 17 100 bp has a total of 38 genes, 13 of which are protein-coding genes, 23 transfer RNA genes, and 2 ribosomal RNA genes. Eight transfer RNAs and 1 protein-coding gene (NADH de-hydrogenase subunit 6, NAD6) are in the complementary strand. In the provided phylogenetic inference, with all avail-able and verified Squalomorphii mitogenomes, the four or-ders are well separated, and as expected, O. paradoxus is placed in the Squaliformes order. This data reinforces the need for more genomic resources for the Oxynotidae family.(c) 2023 The Author(s). Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license ( http://creativecommons.org/licenses/by-nc-nd/4.0/ )pt_PT
dc.description.sponsorshipEuropean Union (EU) 101071300, ATLANTIDA - Norte Portugal Regional Operational Programme NORTE-01-0145-FEDER-000040, Save our Seas Foundation SOSF 501, EEA PT-Innovation -0007, 2023_033_BI_ATLANTIDApt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.doi10.1016/j.dib.2023.109836pt_PT
dc.identifier.eissn2352-3409
dc.identifier.urihttp://hdl.handle.net/10400.1/20316
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherElsevierpt_PT
dc.relationInterdisciplinary Centre of Marine and Environmental Research
dc.relationInterdisciplinary Centre of Marine and Environmental Research
dc.relationAlgarve Centre for Marine Sciences
dc.relationAlgarve Centre for Marine Sciences
dc.relationCentre for Marine and Environmental Research
dc.relationCondition and survival rates of the most frequently discarded deep-sea elasmobranchs from crustacean bottom trawl fisheries in the southern Portugal
dc.relationNot Available
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/4.0/pt_PT
dc.subjectChondrichthyespt_PT
dc.subjectSharkpt_PT
dc.subjectOxynotidaept_PT
dc.subjectMitochondrialpt_PT
dc.subjectPhylogenypt_PT
dc.titleDataset of the complete mitogenome of the deep-sea sailfin roughshark, Oxynotus paradoxus Frade, 1929pt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.awardTitleInterdisciplinary Centre of Marine and Environmental Research
oaire.awardTitleInterdisciplinary Centre of Marine and Environmental Research
oaire.awardTitleAlgarve Centre for Marine Sciences
oaire.awardTitleAlgarve Centre for Marine Sciences
oaire.awardTitleCentre for Marine and Environmental Research
oaire.awardTitleCondition and survival rates of the most frequently discarded deep-sea elasmobranchs from crustacean bottom trawl fisheries in the southern Portugal
oaire.awardTitleNot Available
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04423%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDP%2F04423%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04326%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDP%2F04326%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/LA%2FP%2F0101%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/OE/SFRH%2FBD%2F147493%2F2019/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/CEEC INST 2ed/CEECINST%2F00027%2F2021%2FCP2789%2FCT0003/PT
oaire.citation.startPage109836pt_PT
oaire.citation.titleData in Briefpt_PT
oaire.citation.volume52pt_PT
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStreamOE
oaire.fundingStreamCEEC INST 2ed
person.familyNameGraça Aranha Carvalho Ramos
person.familyNameTeodosio
person.givenNameSofia
person.givenNameMaria
person.identifier.ciencia-idAA1C-EB0A-3F61
person.identifier.ciencia-idAF10-647B-65FB
person.identifier.orcid0000-0002-3664-6896
person.identifier.orcid0000-0002-0939-9885
person.identifier.ridB-5077-2013
person.identifier.scopus-author-id56196396700
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsopenAccesspt_PT
rcaap.typearticlept_PT
relation.isAuthorOfPublication5d0b953c-4367-44c3-8a21-5037e733c164
relation.isAuthorOfPublicationb39b2d6d-d6f5-4130-a9b9-4e7624d44676
relation.isAuthorOfPublication.latestForDiscoveryb39b2d6d-d6f5-4130-a9b9-4e7624d44676
relation.isProjectOfPublication2918f082-1ced-47c5-a6ea-eff9b8eaca1f
relation.isProjectOfPublicationb2e68640-2978-4601-a400-c2eb842438da
relation.isProjectOfPublicationfafa76a6-2cd2-4a6d-a3c9-772f34d3b91f
relation.isProjectOfPublication15f91d45-e070-47d8-b6b8-efd4de31d9a8
relation.isProjectOfPublication794d4c77-c731-471e-bc96-5a41dcd3d872
relation.isProjectOfPublication39c33450-7490-4611-8010-bf1fd5d98913
relation.isProjectOfPublication32f89f53-ef5e-4c11-ac8d-84f55f97a24c
relation.isProjectOfPublication.latestForDiscovery794d4c77-c731-471e-bc96-5a41dcd3d872

Files

Original bundle
Now showing 1 - 1 of 1
Thumbnail Image
Name:
data.pdf
Size:
1.13 MB
Format:
Adobe Portable Document Format
Download
License bundle
Now showing 1 - 1 of 1
No Thumbnail Available
Name:
license.txt
Size:
3.46 KB
Format:
Item-specific license agreed upon to submission
Description:
Download

Collections

CCM2-Artigos (em revistas ou actas indexadas)