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Assessing the genomic composition, putative ecological relevance and biotechnological potential of plasmids from sponge bacterial symbionts

2022-12Journal article Restricted access
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dc.contributor.authorOliveira, Vanessa
dc.contributor.authorPolónia, Ana R. M.
dc.contributor.authorCleary, Daniel F. R.
dc.contributor.authorHuang, Yusheng M.
dc.contributor.authorde Voogd, Nicole J.
dc.contributor.authorKeller-Costa, Tina
dc.contributor.authorCosta, Rodrigo
dc.contributor.authorGomes, Newton C. M.
dc.date.accessioned2023-01-12T11:32:37Z
dc.date.available2023-01-12T11:32:37Z
dc.date.issued2022-12
dc.description.abstractPlasmid-mediated transfer of genes can have direct consequences in several biological processes within sponge microbial communities. However, very few studies have attempted genomic and functional characterization of plasmids from marine host-associated microbial communities in general and those of sponges in particular. In the present study, we used an endogenous plasmid isolation method to obtain plasmids from bacterial symbionts of the marine sponges Stylissa carteri and Paratetilla sp. and investigated the genomic composition, putative ecological relevance and biotechnological potential of these plasmids. In total, we isolated and characterized three complete plasmids, three plasmid prophages and one incomplete plasmid. Our results highlight the importance of plasmids to transfer relevant genetic traits putatively involved in microbial symbiont adaptation and host-microbe and microbe-microbe interactions. For example, putative genes involved in bacterial response to chemical stress, competition, metabolic versatility and mediation of bacterial colonization and pathogenicity were detected. Genes coding for enzymes and toxins of biotechnological potential were also detected. Most plasmid prophage coding sequences were, however, hypothetical proteins with unknown functions. Overall, this study highlights the ecological relevance of plasmids in the marine sponge microbiome and provides evidence that plasmids of sponge bacterial symbionts may represent an untapped resource of genes of biotechnological interest.pt_PT
dc.description.sponsorshipPOCI-01-0145-FEDER-016531; MOST 105-2621-B-346-002; MNPH 104403
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.doi10.1016/j.micres.2022.127183pt_PT
dc.identifier.eissn1618-0623
dc.identifier.urihttp://hdl.handle.net/10400.1/18806
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherElsevierpt_PT
dc.relationAssessing the ECOlogical functions and potential bioTECHnological applications of plasmid assemblages from microbial symbionts of marine SPONGEs
dc.relationHarnessing the power of the microbial metamobilome: using marine sponges as models to uncover novel biotechnological appliances from symbiont communities
dc.relationCentre for Environmental and Marine Studies
dc.relationCentre for Environmental and Marine Studies
dc.relationInstitute for Bioengineering and Biosciences
dc.relationInstitute for Bioengineering and Biosciences
dc.relationSponge Microbes in a Changing World
dc.relationNot Available
dc.subjectHorizontal gene transferpt_PT
dc.subjectHost-microbe interactionspt_PT
dc.subjectPlasmidomept_PT
dc.subjectBlue biotechnologypt_PT
dc.titleAssessing the genomic composition, putative ecological relevance and biotechnological potential of plasmids from sponge bacterial symbiontspt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.awardTitleAssessing the ECOlogical functions and potential bioTECHnological applications of plasmid assemblages from microbial symbionts of marine SPONGEs
oaire.awardTitleHarnessing the power of the microbial metamobilome: using marine sponges as models to uncover novel biotechnological appliances from symbiont communities
oaire.awardTitleCentre for Environmental and Marine Studies
oaire.awardTitleCentre for Environmental and Marine Studies
oaire.awardTitleInstitute for Bioengineering and Biosciences
oaire.awardTitleInstitute for Bioengineering and Biosciences
oaire.awardTitleSponge Microbes in a Changing World
oaire.awardTitleNot Available
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/9471 - RIDTI/PTDC%2FBIA-MIC%2F6473%2F2014/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/5876-PPCDTI/PTDC%2FAAC-AMB%2F115304%2F2009/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/PTDC%2FMAR-BIO%2F1547%2F2014/PT
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oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/DSAIPA%2FAI%2F0094%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/POR_CENTRO/SFRH%2FBPD%2F117563%2F2016/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/CEEC IND 2017/CEECIND%2F00788%2F2017%2FCP1461%2FCT0008/PT
oaire.citation.startPage127183pt_PT
oaire.citation.titleMicrobiological Researchpt_PT
oaire.citation.volume265pt_PT
oaire.fundingStream9471 - RIDTI
oaire.fundingStream5876-PPCDTI
oaire.fundingStream3599-PPCDT
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
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oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream3599-PPCDT
oaire.fundingStreamPOR_CENTRO
oaire.fundingStreamCEEC IND 2017
person.familyNameda Silva Costa
person.givenNameRodrigo
person.identifier115920
person.identifier.ciencia-id5917-D500-D251
person.identifier.orcid0000-0002-5932-4101
person.identifier.ridN-7274-2013
person.identifier.scopus-author-id7203063627
project.funder.identifierhttp://doi.org/10.13039/501100001871
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rcaap.rightsrestrictedAccesspt_PT
rcaap.typearticlept_PT
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