Browsing by Author "Martins, Jorge"
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- Behavior of pyrene as a polarity probe in palmitoylsphingomyelin and palmitoylsphingomyelin/cholesterol bilayers: A molecular dynamics simulation studyPublication . do Canto, António M. T. M.; Santos, Patrícia D.; Martins, Jorge; Loura, Luís M. S.Pyrene is a polycyclic aromatic hydrocarbon noted for its remarkable optical spectroscopic properties. Among its uses as a fluorescent probe, measurement of lipid bilayer's equivalent polarity through the pyrene Ham effect stands out. To this effect, the ratio of the intensities of the first and third vibronic bands (I-1/I-3) in its emission spectrum of pyrene is measured. However, issues concerning the precise location of bilayer-inserted pyrene and the possibility of probe-induced perturbation of host bilayer properties are potential sources of concern in this regard. Atomistic molecular dynamics simulations constitute a useful method for the characterization of lipid membrane systems, and, in particular, to understand the behavior of fluorescence probes upon incorporation in lipid bilayers. In this report, we present a detailed characterization of the behavior of pyrene in fluid N-palmitoylsphingomyelin (PSM) and PSM/cholesterol membranes, with emphasis on the degree of proximity between the probe and water molecules inside bilayers, related to the use of pyrene to measure equivalent lipid bilayer polarity. It is concluded that pyrene exerts minor effects on bilayer properties, with slight local disordering being apparent for high cholesterol content. Whereas rotation and lateral diffusion of pyrene are greatly slowed in cholesterol rich systems, its relative transverse location is not significantly affected. While hydration of PSM bilayers, as sensed by pyrene, is already low compared to that of fluid phosphatidylcholine, it becomes even smaller for high cholesterol mole fraction at the studied temperature. (C) 2014 Elsevier B.V. All rights reserved.
- Bilayer polarity and its thermal dependency in the e(o) and e(d) phases of binary phosphatidylcholine/cholesterol mixturesPublication . Arrais, Dalila; Martins, JorgeDiverse variations in membrane properties are observed in binary phosphatidylcholine/cholesterol mixtures. These mixtures are nonideal, displaying single or phase coexistence, depending on chemical composition and other thermodynamic parameters. When compared with pure phospholipid bilayers, there are changes in water permeability, bilayer thickness and thermomechanical properties, molecular packing and conformational freedom of phospholipid acyl chains, in internal dipolar potential and in lipid lateral diffusion. Based on the phase diagrams for DMPC/cholesterol and DPPC/cholesterol, we compare the equivalent polarity of pure bilayers with specific compositions of these mixtures, by using the Py empirical scale of polarity. Besides the contrast between pure and mixed lipid bilayers, we find that liquid-ordered and liquid-disordered (e(d)) phases display significantly different polarities. Moreover, in the e(o) phase, the polarities of bilayers and their thermal dependences vary with the chemical composition, showing noteworthy differences for cholesterol proportions at 35, 40, and 45 mol%. At 20 degrees C, for DMPC/ cholesterol at 35 and 45 mol%, the equivalent dielectric constants are 21.8 and 23.8, respectively. Additionally, we illustrate potential implications of polarity in various membrane-based processes and reactions, proposing that for cholesterol containing bilayers, it may also go along with the occurrence of lateral heterogeneity in biological membranes. (c) 2007 Elsevier B.V. All rights reserved.
- Decavanadate interactions with actin: inhibition of G-actin polymerization and stabilization of decameric vanadatePublication . Ramos, Susana; Manuel, Miguel; Tiago, Teresa; Duarte, Rui O.; Martins, Jorge; Gutiérrez-Merino, Carlos; Moura, José J. G.; Aureliano, M.Decameric vanadate species (V10) inhibit the rate and the extent of G-actin polymerization with an IC50 of 68 ± 22 lM and 17 ± 2 lM, respectively, whilst they induce F-actin depolymerization at a lower extent. On contrary, no effect on actin polymerization and depolymerization was detected for 2 mM concentration of ‘‘metavanadate’’ solution that contains ortho and metavanadate species, as observed by combining kinetic with 51V NMR spectroscopy studies. Although at 25 C, decameric vanadate (10 lM) is unstable in the assay medium, and decomposes following a first-order kinetic, in the presence of G-actin (up to 8 lM), the half-life increases 5-fold (from 5 to 27 h). However, the addition of ATP (0.2 mM) in the medium not only prevents the inhibition of G-actin polymerization by V10 but it also decreases the half-life of decomposition of decameric vanadate species from 27 to 10 h. Decameric vanadate is also stabilized by the sarcoplasmic reticulum vesicles, which raise the half-life time from 5 to 18 h whereas no effects were observed in the presence of phosphatidylcholine liposomes, myosin or G-actin alone. It is proposed that the ‘‘decavanadate’’ interaction with G-actin, favored by the G-actin polymerization, stabilizes decameric vanadate species and induces inhibition of G-actin polymerization. Decameric vanadate stabilization by cytoskeletal and transmembrane proteins can account, at least in part, for decavanadate toxicity reported in the evaluation of vanadium (V) effects in biological systems.
- Development of a highly sensitive bacteria detection assay using fluorescent pH-responsive polymeric micellesPublication . Mouffouk, Fouzi; Rosa da Costa, Ana; Martins, Jorge; Zourob, Mohammed; Abu-Salah, Khalid; Alrokayan, Salman A.The detection and control of bacteria is extremely important in the safety of food products and health systems. The conventional microbiological methods based on culture enrichment techniques and plating procedures are highly sensitive and selective for bacterial detection but are expensive, cumbersome and time-consuming. Here we report the development of a simple and sensitive bioassay to detect Escherichia coli (E. coli) bacteria by using self assembled pH-responsive polymeric micelles that have been bioconjugated to anti-E. coli (capturing agent). Poly(ethylene glycol-b-trimethylsilyl methacrylate), containing silicon moieties that can be cleaved under mildly acidic conditions, was synthesized and selfassembled into micelles, that were loaded with a fluorescent dye (1-methylpyrene). The polymer silicon protecting groups are used as a tool to remotely activate the dye release by means of pH. The high sensitivity of the newly developed bioassay, which is capable of detecting 15 bacteria per milliliter of solution, is due to an amplification effect generated by the optical signal of millions of fluorophores released from a single micelle upon attachment to a bacterium. Fluorescence probing involves the measurements of changes in the emission spectra, through the disappearance of the excimer band, which only occurs when the dye molecules are trapped within the polymeric micelles.
- Fluorescence sensing of microplastics on surfacesPublication . Costa, Camila Q. V.; Cruz, Joana; Martins, Jorge; Teodosio, Maria; Jockusch, Steffen; Ramamurthy, V.; Da Silva, José PauloMicroplastics, nanoplastics and related products have been recently found in marine ecosystems worldwide, calling for new analytical methods for rapid detection and risk assessment. Fluorescence is a sensitive technique that when used with polarity probes can potentially detect low-polarity plastic particles in environments. Here, we evaluated the fuorescence technique to sense polystyrene microparticles directly on salt, silica and sand surfaces, using Nile Red and pyrene as polarity probes. Results show that all probes displayed fuorescence on silica and sand, whereas strong fuorescence quenching was observed on NaCl. Polystyrene particles increase the fuorescence intensity due to probe migration into their nonpolar microenvironment. In the presence of polystyrene, the spectra of Nile Red are shifted to shorter wavelengths, while the ratio of vibronic bands I1/I3 of fuorescence of pyrene decreases to about 1. Pyrene showed similar sensitivity toward surface-modifed carboxyl polystyrene particles. On NaCl, the emission of pyrene increases linearly with polystyrene content for concentrations from 0.5 to 20 µg/g. The detection limit of polystyrene microparticles on natural sea salt using pyrene as probe is about 0.2 µg/g, while on sand, the sensitivity is about one order of magnitude lower. Overall, although being of relatively low selectivity, the fuorescence technique can be used to determine a maximum content of plastic particles of few micrometers size with little sample preparation. Fluorescence, when used in conjunction with pyrene probe, allows for detection and quantifcation of microplastic particles in the sub-ppm range.
- Improving positive and negative bias illumination stress stability in parylene passivated IGZO transistorsPublication . Kiazadeh, Asal; Gomes, Henrique L.; Barquinha, Pedro; Martins, Jorge; Rovisco, Ana; Pinto, Joana V.; Martins, Rodrigo; Fortunato, ElviraThe impact of a parylene top-coating layer on the illumination and bias stress instabilities of indium-gallium-zinc oxide thin-film transistors (TFTs) is presented and discussed. The parylene coating substantially reduces the threshold voltage shift caused by continuous application of a gate bias and light exposure. The operational stability improves by 75%, and the light induced instability is reduced by 35%. The operational stability is quantified by fitting the threshold voltage shift with a stretched exponential model. Storage time as long as 7 months does not cause any measurable degradation on the electrical performance. It is proposed that parylene plays not only the role of an encapsulation layer but also of a defect passivation on the top semiconductor surface. It is also reported that depletion-mode TFTs are less sensitive to light induced instabilities. This is attributed to a defect neutralization process in the presence of free electrons. Published by AIP Publishing.
- Induction of defence responses by cinnamomins against Phytophthora cinnamomi in Quercus suber and Quercus ilex subs. rotundifoliaPublication . Cravador, A.; Martins, JorgeThe strong association between Phytophthora cinnamomi and the mortality and decline of Quercus suber and Q. ilex subsp. rotundifolia has been known for two decades. The ability of elicitins secreted by this pathogen to trigger defence responses in these Quercus against itself was evaluated in this work. Biomass quantification by quantitative real-time PCR revealed a significant decrease in pathogen colonization of Q. suber roots after 24 h pre-treatment with α- and β-cinnamomin. In Q. suber and Q. ilex roots pre-treated with α-cinnamomin, hyphae were unable to reach and colonize the vascular cylinder and showed cytoplasmic disorganization in all the roots observed as contrasted with non-pre-treated roots. The pathogen was restricted to the intercellular spaces of the cortical parenchyma and the concomitant accumulation of electron dense materials was observed in contact with the hyphae. Furthermore, ROS (reactive oxygen species) production and the enzymatic activities of superoxide dismutase, catalase and peroxidase were compared in infected and non-infected Quercus roots in time course trials. There was a significant increase in the production of hydrogen peroxide (H2O2) and superoxide anion (O2 •-) and an enhanced activity of the enzymes in infected roots was observed at each time point. When comparing with elicitin non-treated roots, the α-cinnamomin-treated roots in interaction with P. cinnamomi showed a decrease in ROS accumulation and an increase of the enzyme activities. The overall results were consistent with an induction by the cinnamomins which initiated defence responses against the pathogen invasion of roots. Finally, elicitins were immunolocalized in the contact zone of P. cinnamomi hyphae with epidermal host cells, plasmalemma outer cytoplasm and around the intracellular hyphae in the vacuoles of invaded epidermal cells.
- Self-assembled polymeric nanoparticles as new, smart contrast agents for cancer early detection using magnetic resonance imagingPublication . Mouffouk, Fouzi; Dornelle, Daniel; Lopes, Andre D.; Martins, Jorge; Abu-Salah, Khalid; Costa, Ana M. Rosa da; dos Santos, Nuno; Sau, Pablo; Simão, Teresa; Alrokayan, Salman A.Early cancer detection is a major factor in the reduction of mortality and cancer management cost. Here we developed a smart and targeted micelle-based contrast agent for magnetic resonance imaging (MRI), able to turn on its imaging capability in the presence of acidic cancer tissues. This smart contrast agent consists of pH-sensitive polymeric micelles formed by self-assembly of a diblock copolymer (poly(ethyleneglycol-b-trimethylsilyl methacrylate)), loaded with a gadolinium hydrophobic complex ((t)BuBipyGd) and exploits the acidic pH in cancer tissues. In vitro MRI experiments showed that (t)BuBipyGd-loaded micelles were pH-sensitive, as they turned on their imaging capability only in an acidic microenvironment. The micelle-targeting ability toward cancer cells was enhanced by conjugation with an antibody against the MUC1 protein. The ability of our antibody-decorated micelles to be switched on in acidic microenvironments and to target cancer cells expressing specific antigens, together with its high Gd(III) content and its small size (35-40 nm) reveals their potential use for early cancer detection by MRI.
- Sensing hydration and behavior of pyrene in POPC and POPC/cholesterol bilayers: A molecular dynamics studyPublication . Loura, Luís M. S.; Martins do Canto, Antonio M. T.; Martins, JorgeMolecular dynamics (MD) simulations of bilayers of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) with varying amounts of cholesterol (0, 5, 20, and 40 mol%) were carried out in the absence and presence of inserted pyrene molecules. Both fluorophore and bilayer parameters were computed, for characterization of probe location and dynamics, as well as its effects on the host bilayer. In agreement with previous studies in fluid disordered bilayers, pyrene prefers to be located in the hydrophobic acyl chain region of POPC bilayers, close to the glycerol group of lipid molecules and causes ordering of the lipid acyl chains. However, incorporation of pyrene in binary POPC/cholesterol bilayers decreases the acyl chain order parameter (especially near the end of the chains), opposing the ordering effect of cholesterol. These effects are modest and mainly felt locally. Significantly, as the bilayer is enriched with cholesterol, the relative position of pyrene and the POPC carbonyl and phosphocholine groups is invariant, and the local water density around the probe decreases. This work clarifies and supports the cautious use of pyrene Ham effect to effectively measure equivalent polarity in lipid bilayers. Within the time scale of the MD simulations, which is of the magnitude of the fluorescence lifetime of pyrene, the thermally averaged polarity of lipid bilayers is nearly out of influence of spurious uncertainty in the transverse location of pyrene in the bilayers. This renders the values of equivalent polarity measurements through the pyrene Ham effect more reliable and reproducible than previously expected. (C) 2012 Elsevier B.V. All rights reserved.