Browsing by Author "Santos, Miguel N."
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- Age and growth of the bigeye thresher shark, Alopias superciliosus, from the pelagic longline fisheries in the tropical northeastern Atlantic Ocean, determined by vertebral band countsPublication . Fernandez-Carvalho, Joana; Coelho, Rui; Erzini, Karim; Santos, Miguel N.The bigeye thresher, Alopias supercilious, is commonly caught as bycatch in pelagic longline fisheries targeting swordfish. Little information is yet available on the biology of this species, however. As part of an ongoing study, observers sent aboard fishing vessels have been collecting set of information that includes samples of vertebrae, with the aim of investigating age and growth of A. supercilious. A total of 117 A. supercilious were sampled between September 2008 and October 2009 in the tropical northeastern Atlantic, with specimens ranging from 101 to 242 cm fork length (FL) (176 to 407 cm total length). The A. supercilious vertebrae were generally difficult to read, mainly because they were poorly calcified, which is typical of Lamniformes sharks. Preliminary trials were carried out to determine the most efficient band enhancement technique for this species, in which crystal violet section staining was found to be the best methodology. Estimated ages in this sample ranged from 2 to 22 years for females and 1 to 17 years for males. A version of the von Bertalanffy growth model (VBGF) re-parameterised to estimate L0, and a modified VBGF using a fixed L0 were fitted to the data. The Akaike information criterion (AIC) was used to compare these models. The VBGF produced the best results, with the following parameters: Linf = 293cm FL, k =0.06/yr and L0 = 111 cm FL for females; Linf = 206 cm FL, k = 0.18/yr and L0 = 93 cm FL for males. The estimated growth coefficients confirm that A. supercilious is a slow-growing species, highlighting its vulnerability to fishing pressure. It is therefore urgent to carry out more biological research to inform fishery managers more adequately and address conservation issues.
- Age and growth of the smooth hammerhead shark, Sphyrna zygaena, in the Eastern Equatorial Atlantic Ocean, using vertebral sectionsPublication . Coelho, Rui; Fernandez-Carvalho, Joana; Amorim, Sérgio; Santos, Miguel N.The smooth hammerhead shark Sphyrna zygaena (Sphyrnidae) is regularly caught as bycatch in pelagic longline fisheries, but is one of the least studied of all pelagic sharks. Recently, ICCAT (International Commission for the Conservation of Atlantic Tunas) issued recommendations underlining the need for more studies on the life history parameters of this and other pelagic shark species. To this end, the age and growth of S. zygaena were studied in the Eastern Equatorial Atlantic Ocean, in an area where growth parameters were not yet available for this species. Data from 139 specimens, caught between June and September 2009, ranging in size from 136 to 233 cm fork length (FL), were analysed. Preliminary trials were carried out to assess the most efficient growth band enhancement technique. These indicated that sectioning the vertebrae into 500 μm sections followed by staining with crystal violet produced the best results. Growth models were fitted using the traditional von Bertalanffy growth equation and a modification of this equation using a known size at birth. Growth models were compared using the Akaike information criterion (AIC). The von Bertalanffy growth equation seemed to be the most adequate model to describe growth in this species, with resulting growth parameters of L inf = 272 cm FL, k = 0.06 year for males and L inf = 285 cm FL, k = 0.07 year for females. In the first four years of life, S. zygaena grows 25 cm per year on average, but its growth slows down in later life. Future stock assessment models should incorporate these age and growth parameters for species management and conservation.
- Age and growth of the smooth hammerhead, Sphyrna zygaena, in the Atlantic Ocean: comparison with other hammerhead speciesPublication . Rosa, Daniela; Coelho, Rui; Fernandez-Carvalho, Joana; Santos, Miguel N.The smooth hammerhead Sphyrna zygaena (Sphyrnidae) is a pelagic shark occasionally caught as bycatch in pelagic longline fisheries, but is one of the least studied of all pelagic sharks. Age and growth of S. zygaena was studied along a wide Atlantic region covering both the northern and southern hemispheres. Data from 304 specimens, caught between October 2009 and September 2014, ranging in size from 126 to 253 cm fork length (FL), were analysed. Growth models were fitted using the three-parameter von Bertalanffy growth function (VBGF) re-parameterized to calculate L0 (size at birth). Growth models were fitted to the sample data and data from several back-calculation models. The model fit to the quadratic modified Dahl-Lea back-calculated data seems to be the most appropriate to describe growth in this species, with resulting growth parameters of Linf = 285 cm FL, k = 0.09 year−1 for males and Linf = 293 cm FL, k = 0.09 year−1 for females. Compared with other species of the same genus, estimated growth coefficients for S. zygaena seem to fall in the low to middle range. Although further work is still needed, this study adds to knowledge of the vital life-history parameters of smooth hammerheads in the Atlantic Ocean, which can be used in the management and conservation of this species.
- An overview of the hooking mortality of elasmobranchs caught in a swordfish pelagic longline fishery in the Atlantic OceanPublication . Coelho, Rui; Fernandez-Carvalho, Joana; Lino, Pedro; Santos, Miguel N.Hooking (or “at-haulback”) fishing mortality was analysed in elasmobranchs captured by Portuguese longliners targeting swordfish in the Atlantic Ocean. Information was collected by on-board fishery observers who monitored 834 longline fishing sets between August 2008 and December 2011, and recorded information on 36,067 elasmobranch specimens from 21 different taxa. The hooking mortality proportions were species-specific, with some species having relatively high percentages of live specimens at time of haulback (e.g., blue shark, crocodile shark, pelagic stingray, manta, devil and eagle rays), while others had higher percentages of dead specimens (e.g., smooth hammerhead, silky shark, bigeye thresher). For the most captured species, logistic GLMs were carried out to compare the mortality rates between sexes, specimen sizes and the regions of operation of the fleet. The sex-specific proportions of hooking mortality were significantly different for blue and crocodile sharks, with the males of both species having higher proportions of hooking mortality than the females. Specimen size was significant for predicting the hooking mortality for blue and shortfin mako sharks: in both cases, the larger specimens had lower odds of dying due to the fishing process. There were differences in the hooking mortality depending on the region of operation of the fleet, but those differences were also species-specific. For blue and crocodile sharks, the hooking mortality was higher in the Equatorial and southern Atlantic areas (when compared to the NE Atlantic region), while the opposite was observed for the shortfin mako, with lower mortality rates in the NE tropical area compared with the other regions. The results presented in this paper can be integrated into future ecological risk assessment analysis for pelagic elasmobranchs. Furthermore, the new information can be used to evaluate the impact of recent recommendations prohibiting the retention of some vulnerable elasmobranch species.
- Comparing GLM, GLMM, and GEE modeling approaches for catch rates of bycatch species: A case study of blue shark fisheries in the South AtlanticPublication . Coelho, Rui; Infante, Paulo; Santos, Miguel N.Modeling and understanding the catch rate dynamics of marine species is extremely important for fisheries management and conservation. For oceanic highly migratory species in particular, usually only fishery‐dependent data are available which have limitations in the assumption of independence and if often zero‐inflated and/or overdispersed. We tested different modeling approaches applied to the case study of blue shark in the South Atlantic, by using generalized linear models (GLMs), generalized linear mixed models (GLMMs), and generalized estimating equations (GEEs), as well as different error distributions to deal with the presence of zeros in the data. We used fractional polynomials to deal with non‐linearity in some of the explanatory variables. Operational (set level) data collected by onboard fishery observers, covering 762 longline sets (1,014,527 hooks) over a 9‐year period (2008–2016), were used. One of the most important variables affecting catch rates is leader material, with increasing catches when wire leaders are used. Spatial and seasonal variables are also important, with higher catch rates expected toward temperate southern waters and eastern longitudes, particularly between July and September. Environmental variables, especially SST, also affect catches. There were no major differences in the parameters estimated with GLMs, GLMMs, or GEEs; however, the use of GLMMs or GEEs should be more appropriate due to fishery dependence in the data. Comparing those two approaches, GLMMs seem to perform better in terms of goodness‐of‐fit and model validation.
- Distribution patterns and population structure of the blue shark (Prionace glauca) in the Atlantic and Indian OceansPublication . Coelho, Rui; Mejuto, Jaime; Domingo, Andrés; Yokawa, Kotaro; Liu, Kwang-Ming; Cortés, Enric; Romanov, Evgeny V.; da Silva, Charlene; Hazin, Fábio; Arocha, Freddy; Mwilima, Aldrin Masawbi; Bach, Pascal; Ortiz de Zárate, Victoria; Roche, William; Lino, Pedro G.; García-Cortés, Blanca; Ramos-Cartelle, Ana M.; Forselledo, Rodrigo; Mas, Federico; Ohshimo, Seiji; Courtney, Dean; Sabarros, Philippe S.; Perez, Bernardo; Wogerbauer, Ciara; Tsai, Wen-Pei; Carvalho, Felipe; Santos, Miguel N.The blue shark (Prionace glauca) is the most frequently captured shark in pelagic oceanic fisheries, especially pelagic longlines targeting swordfish and/or tunas. As part of cooperative scientific efforts for fisheries and biological data collection, information from fishery observers, scientific projects and surveys, and from recreational fisheries from several nations in the Atlantic and Indian Oceans was compiled. Data sets included information on location, size and sex, in a total of 478,220 blue shark records collected between 1966 and 2014. Sizes ranged from 36 to 394 cm fork length. Considerable variability was observed in the size distribution by region and season in both oceans. Larger blue sharks tend to occur in equatorial and tropical regions, and smaller specimens in higher latitudes in temperate waters. Differences in sex ratios were also detected spatially and seasonally. Nursery areas in the Atlantic seem to occur in the temperate south‐east off South Africa and Namibia, in the south‐west off southern Brazil and Uruguay, and in the north‐east off the Iberian Peninsula and the Azores. Parturition may occur in the tropical north‐east off West Africa. In the Indian Ocean, nursery areas also seem to occur in temperate waters, especially in the south‐west Indian Ocean off South Africa, and in the south‐east off south‐western Australia. The distributional patterns presented in this study provide a better understanding of how blue sharks segregate by size and sex, spatially and temporally, and improve the scientific advice to help adopt more informed and efficient management and conservation measures for this cosmopolitan species.
- Effects of hook and bait on targeted and bycatch fishes in an equatorial atlantic pelagic longline fisheryPublication . Coelho, Rui; Santos, Miguel N.; Amorim, SérgioWe examined the effects of different hook style and bait type combinations on the catches of targeted, bycatch, and discarded fishes in equatorial Atlantic waters. In total, 221 longline sets (>305,000 hooks) were deployed from Portuguese pelagic longline vessels (SELECT -PAL Project) during the February–October fishing season. Three different hook styles and two bait types were tested: the traditional J-hook was compared to two circle hooks (one non-offset and one with 10° offset), and squid bait was compared to mackerel. Catch per unit effort (CPU Es) were calculated and compared between the different hook style and bait type combinations, which indicated that the effects of hook style and bait on the CPU Es were species-specific. For example, swordfish CPU Es were higher with J-hooks baited with squid, while for targeted tunas and blue shark only the bait effect was significant, but with opposite effect (i.e., higher catches of tuna with squid bait and higher catches of blue shark with mackerel bait). For the discarded species, at-haulback mortality was also species-specific. Proportions of alive vs dead specimens at time of fishing gear retrieval did not vary significantly by hook style or bait type combinations. The total retained catch was analyzed in value per unit effort (VPU E), and indicated losses in fishery revenue when mackerel was used instead of squid, but not when circle hooks were used instead of J-hooks.
- Fish assemblages and rapid colonization after enlargement of an artificial reef off the Algarve coast (Southern Portugal)Publication . Leitão, Francisco; Santos, Miguel N.; Erzini, Karim; Monteiro, Carlos C.Artificial reefs (ARs) have been deployed in Algarve (Southern Portugal) coastal waters to contribute to the sustainability of local nearshore fisheries. Herein, we describe the colonization process of the recently deployed Faro/Ancao AR, and assess the time until the fish assemblage reaches stability and their seasonal patterns. In addition, we compare the results from the present study with those previously reported for an older AR. The fish assemblages were monitored monthly over a 2-year period by means of visual census. A rapid increase in fish colonization occurred within the first 4 months. After this initial period the assemblage structure showed high similarity (> 73%). The high rate of colonization of the AR was related to the maturity already achieved by the nearby 14-year-old AR and to the fish migration from the Ria Formosa lagoon, a nearby nursery habitat. The reef fish assemblage structure showed a seasonal pattern, mainly associated with recruitment episodes of occasional demersal species (Boops boops, Trachurus trachurus and Pagellus spp.) in spring and summer. A total of 66% of the species found in AR are of commercial and recreational importance. The overall mean density and biomass were 2.8 ind.m(-3) and 207 g.m(-3). The occasional demersal species accounted for 42% of the fish density. The most important species in terms of biomass belong to the Sparidae family along with Dicentrarchus labrax. The fish assemblage of the new ARs showed higher mean number of species, diversity, density and biomass values than those reported for the older AR. This result was associated with enlargement of the AR area and with the fishing exploitation of the isolated, small and patchy old AR. Moreover, the high biomass values recorded in the new ARs were mainly due to the increased density of D. labrax after AR enlargement. The results of the present study are used to define guidelines for suitable management strategies for the AR areas that are exploited by the local commercial and recreational fisheries.
- Habitat use and diel vertical migration of bigeye thresher shark: overlap with pelagic longline fishing gearPublication . Coelho, Rui; Fernandez-Carvalho, Joana; Santos, Miguel N.Pelagic longliners targeting swordfish and tunas in oceanic waters regularly capture sharks as bycatch, including currently protected species as the bigeye thresher, Alopias superciliosus. Fifteen bigeye threshers were tagged with pop-up satellite archival tags (PSATs) in 2012-2014 in the tropical northeast Atlantic, with successful transmissions received from 12 tags for a total of 907 tracking days. Marked diel vertical movements were recorded on all specimens, with most of the daytime spent in deeper colder water (mean depth = 353 m, SD = 73; mean temperature = 10.7 °C, SD = 1.8) and nighttime spent in warmer water closer to the surface (mean depth = 72 m, SD = 54; mean temperature = 21.9 °C, SD = 3.7). The operating depth of the pelagic longline gear was measured with Minilog Temperature and Depth Recorders (TDRs), and the overlap with habitat utilization was calculated. Overlap is taking place mainly during the night and is higher for juveniles. The results presented herein can be used as inputs for Ecological Risk Assessments for bigeye threshers captured in oceanic tuna fisheries, and serve as a basis for efficient management and conservation of this vulnerable shark species.
- Leader material and bait effects on target and bycatch species caught in an Atlantic Ocean pelagic longline fisheryPublication . Casaca Santos, Catarina; Santos, Miguel N.; Rosa, Daniela; Coelho, RuiThe influence of bait type and leader material on target and bycatch species was assessed through fishing experiments in the Portuguese shallow pelagic longline fishery in the Atlantic Ocean. Wire leaders were found to decrease catch rates of commercially valuable species such as bigeye tuna and yellowfin tuna, while increasing catch rates of elasmobranchs, including the blue shark and shortfin mako. The odds ratios of capture swordfish and tunas also decrease when using wire leaders, while elasmobranchs have higher odds ratios of capture and athaulback mortality when using wire leaders. Squid bait led to higher catches of targeted tuna species, however it also resulted in higher catches of marine turtles. For most of the taxa caught at-haulback mortality risk was found to be higher on squid bait, which may be related with increased deep-hooking events. While bait type and leader material did not significantly affect size selectivity for most species, wire leaders were found to retain larger blue sharks and fish bait attracted smaller-sized swordfish. This study showed that banning wire leaders on pelagic longline fisheries is an effective measure for reducing the retention of pelagic shark species, particularly of large size blue sharks.
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