Browsing by Author "Serrao, Ester"
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- Accounting for uncertainty in predictions of a marine species: Integrating population genetics to verify past distributionsPublication . Chefaoui, Rosa; Serrao, EsterWe develop a new perspective on the uncertainties affecting the predictions of coastal species distributions using patterns of genetic diversity to assess the congruence of hindcasted distribution models. We model the niche of the subtidal seagrass Cymodocea nodosa, for which previous phylogeographic findings are used to contrast hypotheses for the Last Glacial Maximum (LGM) in the Mediterranean and adjacent Atlantic coastal regions. We focus on amelioration of sampling bias, and explore the influence of other sources of uncertainty such as the number of variables, Ocean General Circulation Models (OGCMs), and thresholds used. To do that, we test geographical and environmental filtering of presences, and a species-specific weighted filter related to political boundaries for background data. Contrary to our initial hypothesis that reducing sampling bias by means of geographical, environmental or background filtering would enhance predictive power and reliability of the models, none of these approaches consistently improved performance. These counter-intuitive results might be explained by the higher relative occurrence area (ROA) inherent to linear coastal study areas in relation to terrestrial regions, which may cause worse predictions and, thus, higher variability among models. We found that the Ocean General Circulation Models (OGCMs), the threshold and, to a smaller extent, the number of variables used, conditioned greatly the variability of the predictions in both accuracy and geographic range. Despite these uncertainties, all models achieved the goal of identifying long-term persistence regions (glacial refugia) where the highest genetic diversity for Cymodocea nodosa is found nowadays. However, only the CCSM corroborated the hypothesis, raised in previous studies, of a vicariant process in shaping the species' genetic structure. (C) 2017 Elsevier B.V. All rights reserved.
- Adaptive traits are maintained on steep selective gradients despite gene flow and hybridization in the intertidal zonePublication . I Zardi, Gerardo; Nicastro, Katy R; Cánovas, Fernando G.; Costa, J. F.; Serrao, Ester; Pearson, G. A.Gene flow among hybridizing species with incomplete reproductive barriers blurs species boundaries, while selection under heterogeneous local ecological conditions or along strong gradients may counteract this tendency. Congeneric, externallyfertilizing fucoid brown algae occur as distinct morphotypes along intertidal exposure gradients despite gene flow. Combining analyses of genetic and phenotypic traits, we investigate the potential for physiological resilience to emersion stressors to act as an isolating mechanism in the face of gene flow. Along vertical exposure gradients in the intertidal zone of Northern Portugal and Northwest France, the mid-low shore species Fucus vesiculosus, the upper shore species Fucus spiralis, and an intermediate distinctive morphotype of F. spiralis var. platycarpus were morphologically characterized. Two diagnostic microsatellite loci recovered 3 genetic clusters consistent with prior morphological assignment. Phylogenetic analysis based on single nucleotide polymorphisms in 14 protein coding regions unambiguously resolved 3 clades; sympatric F. vesiculosus, F. spiralis, and the allopatric (in southern Iberia) population of F. spiralis var. platycarpus. In contrast, the sympatric F. spiralis var. platycarpus (from Northern Portugal) was distributed across the 3 clades, strongly suggesting hybridization/introgression with both other entities. Common garden experiments showed that physiological resilience following exposure to desiccation/heat stress differed significantly between the 3 sympatric genetic taxa; consistent with their respective vertical distribution on steep environmental clines in exposure time. Phylogenetic analyses indicate that F. spiralis var. platycarpus is a distinct entity in allopatry, but that extensive gene flow occurs with both higher and lower shore species in sympatry. Experimental results suggest that strong selection on physiological traits across steep intertidal exposure gradients acts to maintain the 3 distinct genetic and morphological taxa within their preferred vertical distribution ranges. On the strength of distributional, genetic, physiological and morphological differences, we propose elevation of F. spiralis var. platycarpus from variety to species level, as F. guiryi.
- Ampelisca lusitanica (Crustacea: Amphipoda): new species for the Atlantic coast of MoroccoPublication . Belattmania, Z.; Chaouti, A.; Machado, M.; Engelen, Aschwin; Serrao, Ester; Reani, A.; Sabour, B.Background This study reports for the first time the presence of the Lusitanian ampeliscid amphipod Ampelisca lusitanica Bellan-Santini & Marques, 1986 in the northwestern Atlantic coast of Morocco. Methods Specimens were collected in January 2015 from intertidal rock pools along the El Jadida shoreline associated with the brown algae Bifurcaria bifurcata and Sargassum muticum. Results Systematic description of the species is presented, as well as a discussion of its ecological and geographical distribution. Conclusion This new finding extends the geographical distribution from the Lusitanian (Europe) to the Mauritanian (Africa) region and increases knowledge of the ecology and the global distribution of A. lusitanica found, previously, only on Portuguese and Spanish coasts.
- Bio‐ORACLE v3.0. pushing marine data layers to the CMIP6 earth system models of climate change researchPublication . Assis, Jorge; Fernández Bejarano, Salvador Jesús; Salazar, Vinícius W.; Schepers, Lennert; Gouvêa, Lidiane; Fragkopoulou, Eliza; Leclercq, Frederic; Vanhoorne, Bart; Tyberghein, Lennert; Serrao, Ester; Verbruggen, Heroen; De Clerck, OlivierMotivation: Impacts of climate change on marine biodiversity are often projected with species distribution modelling using standardized data layers representing physical, chemical and biological conditions of the global ocean. Yet, the available data layers (1) have not been updated to incorporate data of the Sixth Phase of the Coupled Model Intercomparison Project (CMIP6), which comprise the Shared Socioeconomic Pathway (SSP) scenarios; (2) consider a limited number of Earth System Models (ESMs), and (3) miss important variables expected to influence future biodiversity distributions. These limitations might undermine biodiversity impact assessments, by failing to integrate them within the context of the most up-to-date climate change projections, raising the uncertainty in estimates and misinterpreting the exposure of biodiversity to extreme conditions. Here, we provide a significant update of Bio-ORACLE, extending biologically relevant data layers from present-day conditions to the end of the 21st century Shared Socioeconomic Pathway scenarios based on a multi-model ensemble with data from CMIP6. Alongside, we provide R and Python packages for seamless integration in modelling workflows. The data layers aim to enhance the understanding of the potential impacts of climate change on biodiversity and to support well-informed research, conservation and management. Main Types of Variable Contained: Surface and benthic layers for, chlorophyll-a, diffuse attenuation coefficient, dissolved iron, dissolved oxygen, nitrate, ocean temperature, pH, phosphate, photosynthetic active radiation, total phytoplankton, total cloud fraction, salinity, silicate, sea-water direction, sea-water velocity, topographic slope, topographic aspect, terrain ruggedness index, topographic position index and bathymetry, and surface layers for air temperature, mixed layer depth, sea-ice cover and sea-ice thickness. Spatial Location and Grain: Global at 0.05 degrees resolution. Time Period and GrainDecadal from present-day to the end of the 21st century (2000-2100). Major Taxa and Level of Measurement: Marine biodiversity associated with surface and epibenthic habitats. Software Format: A package of functions developed for Python and R software.
- Biogeographic population structure of chimeric blades of porphyra in the northeast atlantic reveals southern rich gene pools, introgression and cryptic plasticityPublication . E, Varela-Álvarez; Meirmans, Patrick G.; Guiry, Michael D.; Serrao, EsterThe genus Porphyra sensu lato (Bangiaceae, Rhodophyta), an important seaweed grown in aquaculture, is the most genetically diverse group of the Class Bangiophyceae, but has poorly understood genetic variability linked to complex evolutionary processes. Genetic studies in the last decades have largely focused on resolving gene phylogenies; however, there is little information on historical population biogeography, structure and gene flow in the Bangiaceae, probably due to their cryptic nature, chimerism and polyploidy, which render analyses challenging. This study aims to understand biogeographic population structure in the two abundant Porphyra species in the Northeast Atlantic: Porphyra dioica (a dioecious annual) and Porphyra linearis (protandrous hermaphroditic winter annual), occupying distinct niches (seasonality and position on the shore). Here, we present a large-scale biogeographic genetic analysis across their distribution in the Northeast Atlantic, using 10 microsatellites and cpDNA as genetic markers and integrating chimerism and polyploidy, including simulations considering alleles derived from different ploidy levels and/or from different genotypes within the chimeric blade. For P. linearis, both markers revealed strong genetic differentiation of north-central eastern Atlantic populations (from Iceland to the Basque region of Northeast Iberia) vs. southern populations (Galicia in Northwest Iberia, and Portugal), with higher genetic diversity in the south vs. a northern homogenous low diversity. For. P. dioica, microsatellite analyses also revealed two genetic regions, but with weaker differentiation, and cpDNA revealed little structure with all the haplotypes mixed across its distribution. The southern cluster in P. linearis also included introgressed individuals with cpDNA from P. dioica and a winter form of P. dioica occurred spatially intermixed with P. linearis. This third entity had a similar morphology and seasonality as P. linearis but genomes (either nuclear or chloroplast) from P. dioica. We hypothesize a northward colonization from southern Europe (where the ancestral populations reside and host most of the gene pool of these species). In P. linearis recently established populations colonized the north resulting in homogeneous low diversity, whereas for P. dioica the signature of this colonization is not as obvious due to hypothetical higher gene flow among populations, possibly linked to its reproductive biology and annual life history.
- Biomass and nutrient dynamics of major green tides in Ireland: Implications for biomonitoringPublication . Bermejo, Ricardo; Golden, Nessa; Schrofner, Elena; Knöller, Kay; Fenton, Owen; Serrao, Ester; Morrison, LiamThe control of macroalgal bloom development is central for protecting estuarine ecosystems. The identification of the nutrients limiting the development of macroalgal blooms, and their most likely sources is crucial for management strategies. Three Irish estuaries (Argideen, Clonakilty and Tolka) affected by green tides were monitored from June 2016 to August 2017. During each sampling occasion, biomass abundances, tissue N and P contents, and δ15N were determined for tubular and laminar morphologies of Ulva. All estuaries showed maximum biomass during summer and minimum during winter. Tissue nutrient contents revealed P rather than N limitation. The δ15N during the peak bloom indicated agriculture as the most likely source of nitrogen in the Argideen and Clonakilty, and urban wastewaters in the Tolka. No differences in the δ15N, and the tissue nutrients content were observed between morphologies. The period between May and July is most suitable for bioassessment of green tides.
- Bottom trawling threatens future climate refugia of rhodoliths globallyPublication . Fragkopoulou, Eliza; Serrao, Ester; Horta, Paulo A.; Koerich, Gabrielle; Assis, J.Climate driven range shifts are driving the redistribution of marine species and threatening the functioning and stability of marine ecosystems. For species that are the structural basis of marine ecosystems, such effects can be magnified into drastic loss of ecosystem functioning and resilience. Rhodoliths are unattached calcareous red algae that provide key complex three-dimensional habitats for highly diverse biological communities. These globally distributed biodiversity hotspots are increasingly threatened by ongoing environmental changes, mainly ocean acidification and warming, with wide negative impacts anticipated in the years to come. These are superimposed upon major local stressors caused by direct destructive impacts, such as bottom trawling, which act synergistically in the deterioration of the rhodolith ecosystem health and function. Anticipating the potential impacts of future environmental changes on the rhodolith biome may inform timely mitigation strategies integrating local effects of bottom trawling over vulnerable areas at global scales. This study aimed to identify future climate refugia, as regions where persistence is predicted under contrasting climate scenarios, and to analyze their trawling threat levels. This was approached by developing species distribution models with ecologically relevant environmental predictors, combined with the development of a global bottom trawling intensity index to identify heavily fished regions overlaying rhodoliths. Our results revealed the importance of light, thermal stress and pH driving the global distribution of rhodoliths. Future projections showed poleward expansions and contractions of suitable habitats at lower latitudes, structuring cryptic depth refugia, particularly evident under the more severe warming scenario RCP 8.5. Our results suggest that if management and conservation measures are not taken, bottom trawling may directly threaten the persistence of key rhodolith refugia. Since rhodoliths have slow growth rates, high sensitivity and ecological importance, understanding how their current and future distribution might be susceptible to bottom trawling pressure, may contribute to determine the fate of both the species and their associated communities.
- Brazil oil spill response: protect rhodolith bedsPublication . Soares, M. O.; Teixeira, C. E. P.; Bezerra, L. E. A.; Rossi, S.; Tavares, T.; Cavalcante, R. M.; Assis, J.; Silva, João; Santos, Rui; Serrao, EsterIn his News In Depth story “Mystery oil spill threatens marine sanctuary in Brazil” (8 November 2019, p. 672), H. Escobar highlights important ecosystems that have been affected by the spill. However, he did not mention the Brazilian rhodolith beds—the most extensive, abundant, and diverse biogenic carbonate habitats in the South Atlantic (1). The oil spill severely threatens these ecosystems, which comprise a staggering 2 x 1011 tons of carbonatic bank (2), stretch from 5°N to 27°S along the Brazilian coast, and cover a seabed potential area of 229,000 km2 (1).
- Canopy microclimate modification in central and marginal populations of a marine macroalgaPublication . Monteiro, Cátia; Zardi, Gerardo I.; McQuaid, Christopher D.; Serrao, Ester; Pearson, Gareth; Nicastro, KatyThe effects of environmental changes on species distribution are generally studied at large geographical scales. However, aggregations of individuals can significantly moderate the impact of the environment at smaller, organismal scales. We focused on the intertidal macroalga Fucus guiryi and carried out field and laboratory common garden experiments to evaluate how the different individual morphologies and canopy densities typical of central and peripheral populations modify microhabitat conditions and associated levels of stress. We show that F. guiryi canopies significantly alter environmental conditions (i.e., temperature, humidity and light regimes) and mitigate the levels of stress experienced by individuals within the group. Southern algae are more branched and form denser canopies but, unexpectedly, despite these considerable differences, the mitigating effects of northern and southern canopies did not differ significantly. Microhabitat conditions beneath canopies were more stressful at marginal locations, indicating that southern populations are not more effective than northern algae at mitigating the harsher climate at the edge of the species distribution. Our findings highlight the importance of assessing structural changes in aggregating species across their distribution and relating these to local climates to understand the impact of environmental changes at scales relevant to individual organisms.
- Characterization and comparison of bacterial communities of an invasive and two native Caribbean seagrass species sheds light on the possible influence of the microbiome on invasive mechanismsPublication . Aires, Tania; Stuij, Tamara M.; Muyzer, Gerard; Serrao, Ester; Engelen, AschwinInvasive plants, including marine macrophytes, are one of the most important threats to biodiversity by displacing native species and organisms depending on them. Invasion success is dependent on interactions among living organisms, but their study has been mostly limited to negative interactions while positive interactions are mostly underlooked. Recent studies suggested that microorganisms associated with eukaryotic hosts may play a determinant role in the invasion process. Along with the knowledge of their structure, taxonomic composition, and potential functional profile, understanding how bacterial communities are associated with the invasive species and the threatened natives (species-specific/environmentally shaped/tissue-specific) can give us a holistic insight into the invasion mechanisms. Here, we aimed to compare the bacterial communities associated with leaves and roots of two native Caribbean seagrasses (Halodule wrightii and Thalassia testudinum) with those of the successful invader Halophila stipulacea, in the Caribbean island Curaçao, using 16S rRNA gene amplicon sequencing and functional prediction. Invasive seagrass microbiomes were more diverse and included three times more species-specific core OTUs than the natives. Associated bacterial communities were seagrass-specific, with higher similarities between natives than between invasive and native seagrasses for both communities associated with leaves and roots, despite their strong tissue differentiation. However, with a higher number of OTUs in common, the core community (i.e., OTUs occurring in at least 80% of the samples) of the native H. wrightii was more similar to that of the invader H. stipulacea than T. testudinum, which could reflect more similar essential needs (e.g., nutritional, adaptive, and physiological) between native and invasive, in contrast to the two natives that might share more environment-related OTUs. Relative to native seagrass species, the invasive H. stipulacea was enriched in halotolerant bacterial genera with plant growth-promoting properties (like Halomonas sp. and Lysinibacillus sp.) and other potential beneficial effects for hosts (e.g., heavy metal detoxifiers and quorum sensing inhibitors). Predicted functional profiles also revealed some advantageous traits on the invasive species such as detoxification pathways, protection against pathogens, and stress tolerance. Despite the predictive nature of our findings concerning the functional potential of the bacteria, this investigation provides novel and important insights into native vs. invasive seagrasses microbiome. We demonstrated that the bacterial community associated with the invasive seagrass H. stipulacea is different from native seagrasses, including some potentially beneficial bacteria, suggesting the importance of considering the microbiome dynamics as a possible and important influencing factor in the colonization of non-indigenous species. We suggest further comparison of H. stipulacea microbiome from its native range with that from both the Mediterranean and Caribbean habitats where this species has a contrasting invasion success. Also, our new findings open doors to a more in-depth investigation combining meta-omics with bacterial manipulation experiments in order to confirm any functional advantage in the microbiome of this invasive seagrass.