Browsing by Author "Sobral, M."
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- Classification and morphological characterization of native Portuguese cattle breeds using numerical taxonomyPublication . Sobral, M.; Cravador, A.; Navas, D.; Roberto, C.; Reis, Clara; Lima, M. B.A morphological study was carried out to characterize eight Portuguese cattle breeds by the application of numerical taxonomic methods.
- Identification of descendants of an extinct bovine population from the Algarve region of Portugal using numerical taxonomy analysis of morphological traitsPublication . Sobral, M.; Roberto, C.; Navas, D.; Palmilha, Isabel; Lima, M. B.; Cravador, A.The morphology of a sample of four bulls and 43 cows, presumed to be descendants of the extinct cattle breed ‘Algarvia’ (AG), was used to assign their relationship with animals from other Portuguese autochthonous breeds – Arouquesa (AR), Barrosa˜ (BA), Cachena (CA), Marinhoa (MA), Maronesa (MO), Minhota (MN), Mirandesa (MI), (only bulls), Alentejana (AL), Garvonesa (GA), Mertolenga (ME) and Preta (PR). Standard numerical taxonomic methods were applied to a set of 183 (cows) and 170 (bulls) traits, to derive average pairwise taxonomic distances among the sample of 257 cows and 76 bulls. Distance coefficients (morphological index of distance) ranged from 0.22 to 2.62 (cows) and from 0.49 to 2.13 (bulls). Unweighted pair group method using arithmetic averages (UPGMA)-based phenograms and a principal coordinate analysis showed that bulls were highly clustered and cows showed a tendency to cluster according to their geographical and breed origin. The AG population grouped together with GA, AL, ME and MN breeds in the Red Convex group. The average taxonomic distance among breeds was 1.02, the highest being 1.39 (ME versus BA) and the lowest being 0.64 (MA versus AR). The approach allowed for the identification of a phenotypically differentiated set of animals, comprising 19 cows and four bulls representative of the AG breed, and which can be targeted in further studies aiming at the recovery of this extinct breed.
- Influence of mesh size and tooth spacing on the proportion of damaged organisms in the catches of the Portuguese clam dredge fisheryPublication . Gaspar, Miguel; Miguel de Sousa Leitão, Francisco; Santos, M. N.; Sobral, M.; Chícharo, Luís; Chicharo, Maria Alexandra Teodosio; Monteiro, C. C.Experiments to assess the effect of mesh size and tooth spacing on the catch of Spisula solida were undertaken with the aim of determining an optimal combination of these two characteristics to minimize the dredging impact on by-catch species. However, our data showed that tooth spacing, mesh size and the interactions between these two factors did not affect the number of damaged macrofaunal individual’s caught. This may be because infauna entered the dredge without passing through the space between the teeth and the mesh of the net bag closed as it was stretched by the weight of the contents, preventing the escape of the caught individuals. Thus, independently of mesh size, when the dredge is towed over the sediment, the retained individuals were injured due to abrasion between animals and/or between animals and debris. The severity of injuries inflicted by dredging on different macrobenthic species is related to their morphology and fragility.
- Molecular genetic analysis of a cattle population to reconstitute the extinct Algarvia breedPublication . Ginja, Catarina; Penedo, Maria; Sobral, M.; Matos, José; Borges, Carla; Neves, D.; Rangel-Figueiredo, Teresa; Cravador, A.Abstract Background Decisions to initiate conservation programmes need to account for extant variability, diversity loss and cultural and economic aspects. Molecular markers were used to investigate if putative Algarvia animals could be identified for use as progenitors in a breeding programme to recover this nearly extinct breed. Methods 46 individuals phenotypically representative of Algarvia cattle were genotyped for 27 microsatellite loci and compared with 11 Portuguese autochthonous and three imported breeds. Genetic distances and factorial correspondence analyses (FCA) were performed to investigate the relationship among Algarvia and related breeds. Assignment tests were done to identify representative individuals of the breed. Y chromosome and mtDNA analyses were used to further characterize Algarvia animals. Gene- and allelic-based conservation analyses were used to determine breed contributions to overall genetic diversity. Results Genetic distance and FCA results confirmed the close relationship between Algarvia and southern Portuguese breeds. Assignment tests without breed information classified 17 Algarvia animals in this cluster with a high probability (q > 0.95). With breed information, 30 cows and three bulls were identified (q > 0.95) that could be used to reconstitute the Algarvia breed. Molecular and morphological results were concordant. These animals showed intermediate levels of genetic diversity (MNA = 6.0 ± 1.6, Rt = 5.7 ± 1.4, Ho = 0.63 ± 0.19 and He = 0.69 ± 0.10) relative to other Portuguese breeds. Evidence of inbreeding was also detected (Fis = 0.083, P < 0.001). The four Algarvia bulls had Y-haplotypes H6Y2 and H11Y2, common in Portuguese cattle. The mtDNA composition showed prevalence of T3 matrilines and presence of the African-derived T1a haplogroup. This analysis confirmed the genetic proximity of Algarvia and Garvonesa breeds (Fst = 0.028, P > 0.05). Algarvia cattle provide an intermediate contribution (CB = 6.18, CW = -0.06 and D1 = 0.50) to the overall gene diversity of Portuguese cattle. Algarvia and seven other autochthonous breeds made no contribution to the overall allelic diversity. Conclusions Molecular analyses complemented previous morphological findings to identify 33 animals that can be considered remnants of the Algarvia breed. Results of genetic diversity and conservation analyses provide objective information to establish a management program to reconstitute the Algarvia breed.
- Molecular genetic analysis of a cattle population to reconstitute the extinct Algarvia breedPublication . Cravador, A.; Ginja, Catarina; Penedo, Maria; Sobral, M.; Matos, José; Borges, Carla; Neves, D.; Rangel-Figueiredo, TeresaBackground: Decisions to initiate conservation programmes need to account for extant variability, diversity loss and cultural and economic aspects. Molecular markers were used to investigate if putative Algarvia animals could be identified for use as progenitors in a breeding programme to recover this nearly extinct breed. Methods: 46 individuals phenotypically representative of Algarvia cattle were genotyped for 27 microsatellite loci and compared with 11 Portuguese autochthonous and three imported breeds. Genetic distances and factorial correspondence analyses (FCA) were performed to investigate the relationship among Algarvia and related breeds. Assignment tests were done to identify representative individuals of the breed. Y chromosome and mtDNA analyses were used to further characterize Algarvia animals. Gene- and allelic-based conservation analyses were used to determine breed contributions to overall genetic diversity. Results: Genetic distance and FCA results confirmed the close relationship between Algarvia and southern Portuguese breeds. Assignment tests without breed information classified 17 Algarvia animals in this cluster with a high probability (q > 0.95). With breed information, 30 cows and three bulls were identified (q > 0.95) that could be used to reconstitute the Algarvia breed. Molecular and morphological results were concordant. These animals showed intermediate levels of genetic diversity (MNA = 6.0 ± 1.6, Rt = 5.7 ± 1.4, Ho = 0.63 ± 0.19 and He = 0.69 ± 0.10) relative to other Portuguese breeds. Evidence of inbreeding was also detected (Fis = 0.083, P < 0.001). The four Algarvia bulls had Y-haplotypes H6Y2 and H11Y2, common in Portuguese cattle. The mtDNA composition showed prevalence of T3 matrilines and presence of the African-derived T1a haplogroup. This analysis confirmed the genetic proximity of Algarvia and Garvonesa breeds (Fst = 0.028, P > 0.05). Algarvia cattle provide an intermediate contribution (CB = 6.18, CW = -0.06 and D1 = 0.50) to the overall gene diversity of Portuguese cattle. Algarvia and seven other autochthonous breeds made no contribution to the overall allelic diversity. Conclusions: Molecular analyses complemented previous morphological findings to identify 33 animals that can be considered remnants of the Algarvia breed. Results of genetic diversity and conservation analyses provide objective information to establish a management program to reconstitute the Algarvia breed.
- Size selectivity of the Spisula solida dredge in relation to tooth spacing and mesh sizePublication . Gaspar, Miguel; Miguel de Sousa Leitão, Francisco; Santos, M. N.; Sobral, M.; Chícharo, Luís; Chicharo, Maria Alexandra Teodosio; Monteiro, C. C.A study was undertaken on the northwestern coast of Portugal to evaluate the selectivity effect of both tooth spacing and mesh size on the catch of the white clam (Spisula solida). Two typical clam dredges, equipped with different tooth spacing and mesh size, were towed side by side. Three tooth spacing (20, 40 and 60 mm) and three mesh sizes (35, 40 and 50 mm) were investigated. The dredge selectivity experiments were performed by attaching a cover bag with a 20mm mesh to the gear. Individual hauls were analysed by the SELECT model. The Fryer’s mixed model of between-haul variation was also applied to data. The results showed that the space between teeth does not have an effect on selectivity. Tooth length was directly related to the dredge’s capture efficiency. The only factor that contributed to dredge size selection was mesh size. The 50% retention lengths estimated for mesh sizes 30, 40 and 50mm were 25.68, 26.35 and 31.94 mm, respectively. For all mesh sizes, very narrow selection ranges were observed. The most appropriate mesh size to be enforced within the Portuguese northwestern S. solida fishery should be 40 mm.