FCT2-Artigos (em revistas ou actas indexadas)
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- Super typhoon vs. earthquake as driving force of forest succession in a subtropical tectonically active regionPublication . DOI, Ryoichi; Panagopoulos, ThomasThis study compared the effects of super typhoons and earthquakes on forest succession at the slopes of the Rokko Mountains in Japan. According to changes in the enhanced vegetation index (EVI), the super typhoon in 1991 caused severe, widespread damage to topographically distinct forest stands across the mountains. A major earthquake in 1995 with a magnitude of Mj = 7.2 caused moderate effects on the EVI. The 1994 super typhoon and the 1995 major earthquake exhibited similar spatial damage patterns, with impacts concentrated on the northern slopes. Although the 2018 super typhoon recorded higher wind speeds, there was no reduction in forest stands across the mountains, indicating an increase in forest resilience. Nevertheless, detailed observations revealed localized, patchy impacts in 2018, specifically the death of some evergreen trees on the northern slopes. The 1991 typhoon diminished up to 14% (conf. int. 95%: ±3%) of the pre-typhoon EVI values for the most negatively affected forest stands. Hence, the typhoons were thought to be the primary driving force that accelerated the forest succession by eliminating vulnerable trees. This elimination enhanced the increasing dominance of broadleaved evergreen laurel tree species, which are known to have stronger root systems than the vulnerable conifers. In addition, it was revealed for the first time that multiple vegetation types on slopes under the same topographical conditions were commonly damaged by multiple super typhoons within a 27-year period, during which typhoon-enhanced forest succession was strongly pronounced. The findings offer beneficial prospects for proactive climate-resilient forest management and disaster mitigation strategies tailored to slope-specific vulnerabilities. This study is the first to compare the effects of super typhoons and a major earthquake on forest stands.
- The ecosystem services of irrigated orchards: a reviewPublication . Matias, Pedro; Trindade, Ana Rita; Magalhães, Tomás Thormann Abranches de; Lisboa de Souza Junior, Silvio; Zarcos Duarte, Beatriz; Guerreiro David Coelho, Luísa Isabel; Freitas, Miguel João Pisoeiro de; Barrote, Isabel; Duarte, AmilcarIn the context of global population growth and intensifying climate change, ensuring food security remains a critical challenge. Orchards are more productive than arable crops, contributing significantly to the nutrition of a growing population. Ecologically, due to the absence of frequent soil tillage, orchards resemble natural forest ecosystems more closely than other agricultural systems. Irrigated orchards are particularly productive and enhance biodiversity in territories where water scarcity is the limiting factor for ecosystems. This review, the result of extensive reflection and a comprehensive analysis of the literature on orchard sustainability, synthesizes evidence on the diverse ecosystem services provided by these perennial systems. Due to their structural complexity, well-managed orchards contribute significantly to climate regulation through carbon sequestration, microclimate cooling, and soil erosion prevention. Furthermore, they support nutrient cycling and provide cultural value. This paper establishes an integrated scientific framework to inform evidence-based policies and reshape societal perceptions. It argues that recognizing orchards as multifunctional landscapes, rather than mere resource consumers, is critical for environmental resilience, supporting their fair valuation as essential components of a sustainable bioeconomy.
- UAV-based soil erosion assessment in mediterranean agricultural orchardsPublication . Pagter, Tijs de; Canedo, João Nuno Gomes Vicente; Pijl, Anton; Guerreiro David Coelho, Luísa Isabel; Nunes, João Pedro; Prats, SergioUnmanned Aerial Vehicle (UAV) imagery has become an important tool for erosion monitoring, but little is known about its application in Mediterranean agricultural systems such as vineyards and olive groves. In this study, drone flights were conducted in vineyards and olive groves where mulch and biochar treatments had been applied. Digital terrain models (DTMs) and orthomosaics were constructed using a photogrammetry workflow, and model error was determined via global positioning system (GPS) transects. Erosion was assessed using Digital elevation models of Difference (DoD) and compared with fieldbased erosion plot measurements. Explanatory variables for erosion (soil roughness, slope length, steepness, vegetation cover) were derived from DTMs and orthomosaics and were evaluated in a multiple linear regression model. Although direct measurement of erosion from the DoDs was difficult, this was primarily influenced by the unexpectedly low erosion rates during the study period, and the high root mean square error (RMSE) of the DTMs. Significant differences in DTM-derived variables were found between study areas, and especially between areas with organic and integrated management, even though treatments showed similar patterns. The multiple linear regression model demonstrated strong explanatory power, accounting for a large part of the variation in measured erosion using the UAV-derived variables (R 2 = 0.81). Slope and slope length were the most important predictors of erosion together with the interaction between these two variables. The results suggest that soil erosion in the study areas was mostly determined by topographic and management factors, rather than the applied treatments. This study highlights the value of UAV imagery in advancing the understanding of erosion processes in Mediterranean agricultural systems, while also identifying the challenge of accurately measuring erosion from DoDs under conditions of low erosion rates.
- Adapting mediterranean agroforestry to global change: trade-offs and lessons from the montadoPublication . Fatahi, Nour-Elhouda; Pinto-Correia, Teresa; Ferreira da Silva da Costa Freitas, Maria de Belém; Marques, João Tiago; Belhouchette, HatemThe Montado, a traditional Mediterranean agro-silvopastoral system, has historically sustained ecological and economic functions through the integration of trees, livestock, and crops. Today, its multifunctionality is increasingly threatened by climate variability, market volatility, and evolving policy frameworks. While previous research has examined Montado dynamics at landscape or plot scales, less attention has been paid to sustainability trajectories at the farm level, where management decisions are made. This study bridges that gap by assessing the sustainability dynamics of farms through a participatory, typology based, scenario approach grounded in a regional typology. We characterized three representative farm archetypes (forestry-focused, mixed agro-silvopastoral, and livestock-focused) and evaluated their trajectories under plausible future scenarios driven by climate, market, and policy pressures. Scenario outcomes were assessed using expert-based scoring (five-point scale), revealing score differences of up to two points across sustainability dimensions between farm archetypes and scenarios. Findings reveal marked trade-offs: Tree-focused farms maintain high environmental value but remain vulnerable to market and labor constraints, while livestock-specialized farms achieve higher economic output at the expense of ecological integrity. Mixed systems demonstrate greater resilience through diversification but face significant labor intensity challenges. We conclude that current “one-size-fits-all” policies generate contradictory incentives. Therefore, adaptive governance frameworks (e.g., results-based payment schemes) are essential to realign farm economics with ecological stewardship. Beyond the Montado, the approach provides insights relevant to other Mediterranean agroforestry systems facing similar sustainability challenges.
- Exploring molecular markers associated with Crumbly in Rubus idaeus L.Publication . de Souza Oliveira, Melissa Yves; Valdiviesso, Teresa; Luz, Francisco Rosado; Duarte, Amilcar; Oliveira, Pedro Brás de; Varela, Ana RitaThe raspberry (Rubus idaeus L.), an economically important crop, is affected by the crumbly fruit disorder, a malformation that leads to fruit disintegration at harvest due to poor drupelet cohesion. Despite previous efforts to identify genetic determinants of this phenotype, its complex inheritance and strong environmental component have limited the development of robust predictive markers. This study assessed the behavior and transferability of previously reported SSR and SNP markers associated with crumbly fruit across plants from a diverse panel of 34 R. idaeus cultivars, including in adjacent genomic regions not screened previously. Phenotyping was based on multi-season fruit performance and drupelet cohesion, and genetic variation was analysed using PCR-based genotyping within a multilocus approach. Consistent clustering patterns were observed across multiple SSR and SNP loci, suggesting a reproducible association between these genomic regions and the crumbly phenotype. Overall, the results support a multilocus genetic architecture underlying crumbly fruit, but also demonstrate that previously reported markers are not universally transferable across genetic backgrounds. These findings highlight the importance of integrated, population-aware marker validation to enable more reliable implementation of marker-assisted strategies in raspberry breeding programs.
- Feature papers in BioChem, 2nd EditionPublication . Aureliano, Manuel; Ma, BuyongAs mentioned in the Editorial of the first edition of the Special Issue on “Feature Papers in BioChem”, biochemistry acts as a key cog in the “clock of the knowledge, permitting that wheels from several science areas move each other” [1]. Moreover, the understanding of life on earth is a perpetual topic in biochemistry, with boundaries dependent on the specificities of each time period and scientific environment [1]. Thus, following the first edition, this Special Issue on “Feature Papers in BioChem, 2nd Edition” still emphases interdisciplinary research in diverse and interconnected scientific areas, with a majority from molecular medicine, cell biology and of course biochemistry (Table 1). Among these scientific fields, a wide range of topics were addressed, as expressed by the diversity of the titles and keywords that can be found in each contribution.
- Thermal energy storage in renewable energy communities: a state-of-the-art reviewPublication . Santos, Tiago J. C.; Farinha, José M. Torres; Mendes, Mateus; Monteiro, JânioRenewable Energy Communities (RECs) are recognized as effective collective models to accelerate decarbonization through shared renewable generation, consumption, and local flexibility provision. However, their large-scale deployment remains constrained by the temporal mismatch between variable renewable generation and strongly time-dependent demand, particularly in buildings where heating and cooling dominate final energy use. This state-of-the-art review provides an integrated and comparative assessment of Thermal Energy Storage (TES) and Battery Energy Storage Systems (BESS) within RECs, with explicit focus on power-to-heat (PtH) pathways and phase change material (PCM)-based cooling storage. Based on a structured analysis of the peer-reviewed literature published between 2015 and 2025, the review shows that TES represents a cost-effective and durable complement to electrochemical storage in heating- and cooling-dominated communities. Reported results indicate that TES integration can reduce peak electrical demand by 20–35%, increase local renewable self-consumption by 15–40%, and significantly lower required battery capacity in hybrid configurations. While BESS remains indispensable for short-term electrical balancing and fast-response grid services, TES offers lower costs per kWh stored, longer operational lifetimes (often exceeding 25–40 years), and lower lifecycle greenhouse gas emissions, typically 70–85% lower than those of BESS when thermal energy is used directly. Among TES technologies, PCM-based systems demonstrate particular effectiveness in cooling-dominated RECs, enabling peak cooling power reductions of up to 30% through diurnal load shifting. Across climatic contexts, the literature converges on hybrid TES–BESS architectures as the most robust storage solution, with reported reductions in grid imports and renewable curtailment of up to 35–40%. In addition, TES uniquely enables seasonal energy shifting, for which no cost-competitive electrochemical alternative currently exists. Despite these advantages, the review identifies persistent gaps related to the limited availability of long-term operational data and the need for empirical validation of hybrid control strategies. Future research should prioritize multi-year field demonstrations, advanced data-driven energy management, and policy frameworks that explicitly recognize thermal flexibility and sector coupling within Renewable Energy Communities.
- An empirical model for non-linear pressure drag across non-hydrostatic flow regimes with trapped lee wavesPublication . Argain, Jose LuisThis study introduces a novel empirical model to estimate the total pressure drag generated by trapped lee waves (TLW) and upward-propagating internal waves in moderate-to-strong non-hydrostatic, stratified flow over a mountain ridge, as a function of flow non-linearity. The core framework is based on a two-layer atmosphere characterized by a piecewise-constant Scorer parameter, l, where a lower layer of constant l1 underlies an upper layer with l2<l1. This framework incorporates key features to extend beyond idealized assumptions, providing a reliable tool for predicting non-linear flow regimes over mountainous terrain, particularly those featuring realistic vertical profiles of the Scorer parameter. To develop the empirical formulation, a micro- to mesoscale numerical model is employed to simulate realistic, non-linear flows over steep topography. The proposed empirical model yields results that compare favorably with numerical simulations across a range of moderate-to-strong non-hydrostatic regimes, including complex cases derived from observational data and realistic vertical profiles of the Scorer parameter. The model demonstrates robust performance ranging from strongly to moderately non-hydrostatic regimes (the latter corresponding to dimensionless half-widths of approximately 5), and provides accurate drag estimates for non-linearities up to a dimensionless mountain height of approximately unity. Therefore, this empirical approach serves as a valuable foundation for improving drag parameterizations in weather prediction models, offering a computationally efficient alternative to high-resolution numerical downscaling over steep terrain.
- Assessment of cell disruption methods in an integrated multi-product biorefinery for Nannochloropsis Oceanica: from process design to economic analysis.Publication . Cunha, Pedro; Carvalho, Bernardo; Kholany, Mariam; Pereira, Hugo; Varela, JoãoMicroalgae are bioresources with significant potential within a sustainable, circular, bio-economy. However, high production costs have limited the widespread use of algae biomass. This study aimed to develop a multi-product biorefinery for Nannochloropsis oceanica that generates multiple revenue streams from the biomass, thereby enhancing the economic viability of algal production. The effectiveness of cell wall disruption using high-pressure homogenization and enzymatic hydrolysis was evaluated. Enzymatic hydrolysis solubilized nearly half (48.2 ± 1.5%) of the dry cell weight, compared to only 27.3 ± 3.2% with high-pressure homogenization, resulting in more concentrated water-soluble fractions and significantly higher protein extraction yields. Lipid extracts obtained after enzymatic hydrolysis had higher lipid (72.0 ± 5.3% w/w) and eicosapentaenoic acid (28.1 ± 6.9% w/w) contents than those from high-pressure homogenization (38.8 ± 6.1% w/w lipids; 9.1 ± 0.6% w/w eicosapentaenoic acid), despite similar lipid extraction yields (around 30%). Increasing the ethanol volumetric ratio from 58% to 75% v/v significantly improved lipid extraction yields (57.4 ± 3.1%) in the enzymatic hydrolysis-based biorefinery, with even higher yields observed upon scaling up (70.1%). All fractions, including lipid extracts, exhibited a balanced essential amino acid profile that exceeded the WHO/FAO/UNU-recommended values. A preliminary economic analysis indicated that lipid production was more cost-effective when cells were permeabilized by enzymatic hydrolysis than by high-pressure homogenization.
- Pitaya as a new alternative crop for Iberian Peninsula: cultural practicesPublication . Trindade, Ana Rita; Matias, Pedro; Lacerda, Vander; Pestana, Maribela; Tomás Marques, Natália; Duarte, AmilcarPitaya (Selenicereus spp.) cultivation has expanded in the Iberian Peninsula in recent years, driven mainly by increasing demand from the European market and by the crop’s good adaptability to Mediterranean conditions. However, the successful consolidation of this crop requires the adoption of cultural practices adapted to regional edaphoclimatic conditions and production systems. The present review aims to synthesise and critically analyse the scientific literature on pitaya cultural practices, integrating information from major producing regions worldwide and from Mediterranean environments, where data remain limited. Key topics include propagation methods for success in early development, training systems and pruning, soil management within the framework of sustainable orchard management practices and the crop’s versatility in integrating diverse agroecosystems. In addition, bibliometric analysis identified water requirements and irrigation strategies as key aspects for which region-specific guidelines are still required. This study emphasises the utilisation of floral induction techniques and the significance of supplementary manual pollination for ensuring higher productivity and superior fruit quality. Overall, this review provides a consolidated reference to support the development of sustainable and regionally adapted pitaya production systems in the Iberian Peninsula.