Loading...
3 results
Search Results
Now showing 1 - 3 of 3
- Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysisPublication . Coelho, Márcio; Ledoux, Jean-Baptiste; Boavida, Joana; Paulo, Diogo; Gómez-Gras, Daniel; Bensoussan, Nathaniel; López-Sendino, Paula; Cerrano, Carlo; Kipson, Silvija; Bakran-Petricioli, Tatjana; Garrabou, Joaquim; A, Serrão; Pearson, GarethThe Gray's sea fan, Paramuricea grayi (Johnson, 1861), typically inhabits deep littoral and circalittoral habitats of the eastern temperate and tropical Atlantic Ocean. Along the Iberian Peninsula, where P. grayi is a dominant constituent of circalittoral coral gardens, two segregating lineages (yellow and purple morphotypes) were recently identified using single-copy nuclear orthologues. The mitochondrial genomes of 9 P. grayi individuals covering both color morphotypes were assembled from RNA-seq data, using samples collected at three sites in southern (Sagres and Tavira) and western (Cape Espichel) Portugal. The complete circular mitogenome is 18,668 bp in length, has an A + T-rich base composition (62.5%) and contains the 17 genes typically found in Octocorallia: 14 protein-coding genes (atp6, atp8, cob, cox1-3, mt-mutS, nad1-6, and nad4L), the small and large subunit rRNAs (rns and rnl), and one transfer RNA (trnM). The mitogenomes were nearly identical for all specimens, though we identified a noteworthy polymorphism (two SNPs 9 bp apart) in the mt-mutS of one purple individual that is shared with the sister species P. clavata. The mitogenomes of the two species have a pairwise sequence identity of 99.0%, with nad6 and mt-mutS having the highest rates of non-synonymous substitutions.
- Open coast seagrass restoration. Can we do it? Large scale seagrass transplantsPublication . Paulo, Diogo; Cunha, Alexandra H.; Boavida, Joana; Serrao, Ester; Gonçalves, Emanuel J.; Fonseca, MarkSome of the major challenges in seagrass restoration on exposed open coasts are the choice of transplant design that is optimal for coastlines periodically exposed to high water motion, and understanding the survival and dynamics of the transplanted areas on a long time-scale over many years. To contribute to a better understanding of these challenges, we describe here part of a large-scale seagrass restoration program conducted in a Marine Park in Portugal. The goal of this study was to infer if it was possible to recover seagrass habitat in this region, in order to restore its ecosystem functions. To infer which methods would produce better long term persistence to recover seagrass habitat, three factors were assessed: donor seagrass species, transplant season, source location. Monitoring was done three times a year for 8 years, in which areas and densities of the planted units were measured, to assess survival and growth. The best results were obtained with the species Zostera marina transplanted during spring and summer as compared to Zostera noltii and Cymodocea nodosa. Long-term persistence of established (well rooted) transplants was mainly affected by extreme winter storms but there was evidence of fish grazing effects also. Our results indicate that persistence assessments should be done in the long term, as all transplants were successful (survived and grew initially) in the short term, but were not resistant in the long term after a winter with exceptionally strong storms. The interesting observation that only the largest (11 m(2)) transplanted plot of Z marina persisted over a long time, increasing to 103 m(2) in 8 years, overcoming storms and grazing, raised the hypothesis that for a successful shift to a vegetated state it might be necessary to overpass a minimum critical size or tipping point. This hypothesis was therefore tested with replicates from two donor populations and results showed effects of size and donor population, as only the larger planting units (PUs) from one donor population persisted and expanded. It is recommended that in future habitat restoration efforts large PUs are considered.
- A well-kept treasure at depth: precious red coral rediscovered in Atlantic deep coral gardens (SW Portugal) after 300 yearsPublication . Boavida, Joana; Paulo, Diogo; Aurelle, Didier; ARNAUD-HAOND, Sophie; Marschal, Christian; Reed, John; Gonçalves, J. M. S.; Serrão, EsterThe highly valuable red coral Corallium rubrum is listed in several Mediterranean Conventions for species protection and management since the 1980s. Yet, the lack of data about its Atlantic distribution has hindered its protection there. This culminated in the recent discovery of poaching activities harvesting tens of kg of coral per day from deep rocky reefs off SW Portugal. Red coral was irregularly exploited in Portugal between the 1200s and 1700s, until the fishery collapsed. Its occurrence has not been reported for the last 300 years.