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- Epidemiology of skin ulceration disease in wild sea cucumber Holothuria arguinensis, a new aquaculture target speciesPublication . Cánovas, F.; DOMINGUEZ GODINO, JORGE ANTONIO; Gonzalez-Wanguemert, MercedesInterest in wildlife epidemiology has increased in recent years. The control of diseases is critical for the survival of natural populations of economically valuable species. The present study is the first investigation of the etiology and epidemiology of skin ulceration disease in the sea cucumber Holothuria arguinensis, a new target species for fisheries and aquaculture in Europe. Bacterial cultures and molecular techniques were used to characterize this disease in animals collected during a survey across Ria Formosa Natural Park coastal lagoon in southern Portugal. Vibrio gigantis and V. crassostreae, which were both originally identified as disease agents in cultured oysters, were the most commonly isolated species of bacteria. Given that both sampling areas from which symptomatic H. arguinensis were collected were close to open oyster aquaculture facilities, this raises the possibility of an opportunistic infection, perhaps secondary to a decreased immune response caused by biotic or abiotic factors. An increase in prevalence of skin ulceration disease during the warmer season suggests that solar radiation and desiccation due to air exposure during low tide could be a cause of abiotic stress in the lagoon. Distributions of abundance and sizes of H. arguinensis in affected areas showed highest morbidity rates in adults. High fishery pressures throughout the study period could also cause elevations in prevalence and incidence rate of this disease. Skin ulcerative disease is endemic in this coastal lagoon. Disease monitoring is thus essential for the development of a conservation program to ensure the sustainability of fisheries and protection of natural resources.
- Connectivity patterns inferred from the genetic structure of white seabream (Diplodus sargus L.)Publication . Gonzalez-Wanguemert, Mercedes; Canovas, Fernando; Perez-Ruzafa, A.; Marcos, C.; Alexandrino, PauloThemarine environment seems, at first sight, to be a homogeneousmediumlacking barriers to species dispersal. Nevertheless, populations of marine species show varying levels of gene flow and population differentiation, so barriers to gene flow can often be detected. Weaimto elucidate the role of oceanographical factors ingenerating connectivity among populations shaping the phylogeographical patterns in the marine realm, which is not only a topic of considerable interest for understanding the evolution ofmarine biodiversity but also formanagement and conservation of marine life. For this proposal,we investigate the genetic structure and connectivity between continental and insular populations ofwhite seabreamin North East Atlantic (NEA) and Mediterranean Sea (MS) aswell as the influence of historical and contemporary factors in this scenario using mitochondrial (cytochrome b) and nuclear (a set of 9 microsatellite) molecular markers. Azores population appeared genetically differentiated in a single cluster using Structure analysis. This result was corroborated by Principal Component Analysis (PCA) and Monmonier algorithm which suggested a boundary to gene flow, isolating this locality. Azorean population also shows the highest significant values of FST and genetic distances for both molecular markers (microsatellites and mtDNA). We suggest that the breakdown of effective genetic exchange between Azores and the others' samples could be explained simultaneously by hydrographic (deep water) and hydrodynamic (isolating current regimes) factors acting as barriers to the free dispersal of white seabream(adults and larvae) and by historical factors which could be favoured for the survival of Azorean white seabream population at the last glaciation. Mediterranean islands show similar genetic diversity to the neighbouring continental samples and nonsignificant genetic differences. Proximity to continental coasts and the current system could promote an optimal larval dispersion among Mediterranean islands (Mallorca and Castellamare) and coasts with high gene flow.
- Northerly wind trends along the Portuguese marine coast since 1950Publication . Leitão, Francisco; Relvas, Paulo; Canovas, Fernando; Baptista, Vânia; Teodosio, M. A.Wind is a marine coastal factor that is little understood but has a strong interaction with biological productivity. In this study, northerly wind trends in three regions of the Portuguese coast (Northwestern: NW, Southwestern: SW, and Southern: S) were analyzed. Two datasets with long-term (ICOADS: 1960-2010) and short-term data (Satellite: 1989-2010) were used to complement one another. The study revealed the northerly wind yearly data to be non-stationary and highly variable between years. Overall, the northerly wind intensity increased throughout the 1960s regardless of the area and dataset. Between 1960 and 2010, the northerly wind increased at a linear rate of 0.24, 0.09, and 0.15ms-1 per decade in the NW, SW, and S coastal regions, respectively. The rate was higher in recent decades (1988-2009), with the wind intensity increasing by 0.4, 0.3, and 0.3ms-1 per decade in the NW, SW, and S regions, respectively. Analyses of the sudden shifts showed significant increases in northerly wind intensities after 2003, 2004, and 1998 in the NW, SW, and S coast, respectively. Exceptions were found for autumn (September for short-term data), when a decrease in northerly winds was observed in recent decades, regardless of the area, and for summer, when no changes in wind trends were recorded in the NW and SW. The long-term data also showed a major increase in northerly winds in winter (January and February), which is the recruitment season for many small and medium-sized pelagic fish. The increase in the intensity of the northerly winds over the past two decades and the past half-century occurred at a higher rate than was estimated by the IPCC for the next century.
- Correction to: Northerly wind trends along the Portuguese marine coast since 1950Publication . Leitão, Francisco; Relvas, Paulo; Canovas, Fernando; Baptista, Vânia; Teodósio, M. A.All figure captions are not accurate. Also, there is a repeated error in most figures because the vertical scales incorrectly show Wind Strenght instead of Wind Strength and in Fig. 4 (mid-panel) 2003 instead of 2004.
- Metatranscriptomes reveal functional variation in diatom communities from the Antarctic PeninsulaPublication . Pearson, Gareth; Lago-Lestón, Asunción; Canovas, Fernando; Cox, C. J.; Verret, Frédéric; Lasternas, Sebastian; Duarte, Carlos M.; Agusti, Susana; Serrao, Ester A.Functional genomics of diatom-dominated communities from the Antarctic Peninsula was studied using comparative metatranscriptomics. Samples obtained from diatom-rich communities in the Bransfield Strait, the western Weddell Sea and sea ice in the Bellingshausen Sea/Wilkins Ice Shelf yielded more than 500K pyrosequencing reads that were combined to produce a global metatranscriptome assembly. Multi-gene phylogenies recovered three distinct communities, and diatom-assigned contigs further indicated little read-sharing between communities, validating an assembly-based annotation and analysis approach. Although functional analysis recovered a core of abundant shared annotations that were expressed across the three diatom communities, over 40% of annotations (but accounting for <10% of sequences) were community-specific. The two pelagic communities differed in their expression of N-metabolism and acquisition genes, which was almost absent in post-bloom conditions in the Weddell Sea community, while enrichment of transporters for ammonia and urea in Bransfield Strait diatoms suggests a physiological stance towards acquisition of reduced N-sources. The depletion of carbohydrate and energy metabolism pathways in sea ice relative to pelagic communities, together with increased light energy dissipation (via LHCSR proteins), photorespiration, and NO3 uptake and utilization all pointed to irradiance stress and/or inorganic carbon limitation within sea ice. Ice-binding proteins and cold-shock transcription factors were also enriched in sea ice diatoms. Surprisingly, the abundance of gene transcripts for the translational machinery tracked decreasing environmental temperature across only a 4 degrees C range, possibly reflecting constraints on translational efficiency and protein production in cold environments.
- Spatial distribution patterns and movements of Holothuria arguinensis in the Ria Formosa (Portugal)Publication . Siegenthaler, Andjin; Canovas, Fernando; Gonzalez-Wangueemert, MercedesHolothurian populations are under pressure worldwide because of increasing demand for beche-de-mer, mainly for Asian consumption. Importations to this area from new temperate fishing grounds provide economic opportunities but also raise concerns regarding future over-exploitation. Studies on the habitat preferences and movements of sea cucumbers are important for the management of sea cucumber stocks and sizing of no-take zones, but information on the ecology and behavior of temperate sea cucumbers is scarce. This study describes the small-scale distribution and movement patterns of Holothuria arguinensis in the intertidal zone of the Ria Formosa national park (Portugal).Mark/recapture studieswere performed to record theirmovements over time on different habitats (sand and seagrass). H. arguinensis preferred seagrass habitats and did not show a size or life stage-related spatial segregation. Its density was 563 ind. ha−1 and mean movement speed was 10 m per day. Movement speed did not differ between habitats and the direction of movement was offshore during the day and shoreward during the night. Median home range size was 35 m2 and overlap among home ranges was 84%. H. arguinensis' high abundance, close association with seagrass and easy catchability in the intertidal zone, indicate the importance of including intertidal lagoons in future studies on temperate sea cucumber ecology since those systems might require different management strategies than fully submerged habitats.
- Phosphoglucose isomerase variability of Cerastoderma glaucum as a model for testing the influence of environmental conditions and dispersal patterns through quantitative ecology approachesPublication . Gonzalez-Wangueemert, Mercedes; Canovas, Fernando; Marcos, Concepcion; Perez-Ruzafa, AngelExtreme conditions of coastal lagoons could directly modify the genetic patterns of species. The aim of this work was to investigate the influence of environmental conditions and small scale dispersal patterns on the phosphoglucose isomerase (PGI*) genetic variability of Cerastoderma glaucum from the Mar Menor coastal lagoon. For this purpose, 284 cockles were collected around the perimeter of the lagoon. Vertical polyacrylamide gel electrophoresis was used to scan for PGI* polymorphisms, giving a total of seven alleles. The spatial genetic distribution of the PGI* variability, which seems to be marked by the main circulation in the lagoon, discriminates four hydrological basins. In the central basin, a gradient of allelic composition reflects the circulation forced by the dominant winds and the main channel communicated to the open sea. This result is well supported by the salinity GAM model that defines this gradient. The other three basins are defined by the distribution of fine sand in a more complex model that tries to explain the isolation of the three sites localized inside these basins. The southern, western and northern basins show the lowest degree of interconnection and are considered the most confined areas of the Mar Menor lagoon. This situation agrees with the confinement theory for benthic assemblages in the lagoon. The greater degree of differentiation seen in the Isla del Ciervo population is probably due to recent human intervention on the nearby Marchamalo channel, which has been drained in recent years thus altering the influence of the Mediterranean Sea on the southern basin.
- Outlanders in an unusual habitat: holothuria mammata (Grube, 1840) behaviour on seagrass meadows from Ria Formosa (S Portugal)Publication . Siegenthaler, Andjin; Canovas, Fernando; Gonzalez-Wanguemert, MercedesHolothuria mammata is one of the new target species from the Mediterranean and Atlantic. Usually, it inhabits rocky bottoms, staying in crevices and holes during the day and leaving them in the night for feeding on sandy bottoms. However, it can be found in unusual habitats such as seagrass with diurnal and nocturnal feeding. This study provides information for the first time on the behaviour, density and small scale distribution of H. mammata in a seagrass habitat from Ria Formosa (S Portugal). To reach these aims, a mark/recapture methodology was used. Abundance was estimated through R statistical software v.2.15.3 (package "Rcapture"). The minimum area method was applied in GRASS GIS v.6.4.2 for home range. Size distribution was estimated applying a Shapiro-Wilk test. Rayleigh test for randomness was applied to study the directionality of movements. A circular one-way ANOVA was used to test for differences in movement direction. Capture probability was higher on seagrass than sand and the total length of the individuals ranged from 13 to 25 cm. Movement speed was between 4.7 and 14.7 m day(-1). Movements were not directional. H. mammata differs in its behaviour from the related Holothuria arguinensis occurring in the same habitat.