European Marine Biological Research Infrastructure Cluster to promote the Blue Bioeconomy

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Diatom species fluxes in the seasonally ice-covered Antarctic Zone:. New data from offshore Prydz Bay and comparison with other regions from the eastern Antarctic and western Pacific sectors of the Southern Ocean

Publication . Rigual-Hernandez, A. S.; Pilskaln, C. H.; Cortina, A.; Abrantes, Fatima; Armand, L. K.

The Antarctic Zone, the southernmost belt of the Antarctic Circumpolar Current, plays an important role in the control of atmospheric carbon dioxide concentrations. In the last decade, a number of studies have highlighted the importance of diatom assemblage composition in influencing the magnitude of the organic carbon and biogenic silica fluxes exported out of the mixed layer in Southern Ocean ecosystems. Here we investigate the relationship between the makeup of the diatom assemblage, organic carbon and biogenic silica export and several significant environmental parameters using sediment trap records deployed in different sectors of the Antarctic Zone. The study is divided in two parts. We first present unpublished diatom species flux data collected by a sediment trap in the offshore waters of Prydz Bay (Station PZB-1) over a year. The results of this study revealed a major export peak of diatom valves in Austral summer and two small unexpected secondary flux pulses dining full winter conditions. The summer diatom sinking assemblages were largely composed of small and rapidly dividing species such as Fragilariopsis cylindrus, Fragilariopsis curta and Pseudo-nitzschia lineola, while winter assemblages were dominated by Fragilariopsis kerguelensis most reflecting its persistent strategy and selective preservation. In the second part of the study, we compare the annual diatom assemblage composition and biogeochemical fluxes of Station PZB-1 with flux data documented in previous sediment trap studies conducted in other sectors of the Antarctic Zone in order to investigate how diatom floristics influence the composition and magnitude of particle fluxes in the Antarctic Zone. The lack of correlation between the annual diatom valve, organic carbon and biogenic silica fluxes across stations indicates that other factors aside from diatom abundance play a major role in the carbon and silica export in AZ. Among these factors, the composition of the diatom assemblage appears to be critical, as suggested by the strong and significant correlation between Bio-SiO2 and the valve fluxes of F. kerguelensis alone, that this species is the main Bio-SiO2 vector from the surface layer to the deep ocean in the AZ waters, regardless of its relative abundance. Lastly, the good correlation between the annual fluxes of the group of small Fragilariopsis species with satellite-derived chlorophyll-a concentration estimates over the study stations, suggest that high abundances of these species in the Southern Ocean paleorecords could be used as a proxy of high algal biomass accumulation.

2019-03Journal article

Open access

Proteomics of sea bass skin-scales exposed to the emerging pollutant fluoxetine compared to estradiol

Publication . Anjos, L.; Estêvão, Dulce; Santos, S.; Santa, C.; Manadas, B.; Monsinjon, T.; Canario, Adelino; Power, Deborah; Pinto, Patricia IS

Teleost fish skin-scales are essential for protection and homeostasis and the largest tissue in direct contact with the environment, but their potential as early indicators of pollutant exposure are hampered by limited knowledge about this model. This study evaluated multi-level impacts of in vivo exposure of European sea bass to fluoxetine (FLX, a selective serotonin-reuptake inhibitor and an emerging pollutant) and 17 beta-estradiol (E2, a natural hormone and representative of diverse estrogenic endocrine-disrupting pollutants). Exposed fish had significantly increased circulating levels of FLX and its active metabolite nor-FLX that, in contrast to E2, did not have estrogenic effects on most fish plasma and scale indicators. Quantitative proteomics using SWATH-MS identified 985 proteins in the scale total proteome. 213 proteins were significantly modified 5 days after exposure to E2 or FLX and 31 were common to both treatments and responded in the same way. Common biological processes significantly affected by both treatments were protein turnover and cytoskeleton reorganization. E2 specifically up-regulated proteins related to protein production and degradation and down-regulated the cytoskeleton/extracellular matrix and innate immune proteins. FLX caused both up- and down-regulation of protein synthesis and energy metabolism. Multiple estrogen and serotonin receptor and transporter transcripts were altered in sea bass scales after E2 and/or FLX exposure, revealing complex disruptive effects in estrogen/serotonin responsiveness, which may account for the partially overlapping effects of E2 and FLX on the proteome. A large number (103) of FLX-specifically regulated proteins indicated numerous actions independent of estrogen signalling. This study provides the first quantitative proteome of the fish skin-scale barrier, elucidates routes of action and biochemical and molecular signatures of E2 or FLX-exposure and identifies potential physiological consequences and candidate biomarkers of pollutant exposure, for monitoring and risk assessment.

2022Journal article

Restricted access

Proteome dataset of sea bass (Dicentrarchus labrax) skin-scales exposed to fluoxetine and estradiol

Publication . L, Anjos; PI Pinto, PPinto; Santos, Soraia; Estêvão, M. Dulce; Santa, Cátia; Manadas, Bruno; Canario, A.V.M.; Power, Deborah

Contamination of aquatic ecosystems with anthropogenic pollutants, including pharmaceutical drugs, is a major concern worldwide. Aquatic organisms such as fish are particularly at risk of exposure to pollutants. The surface of fish is the first point of contact with pollutants, but few studies have considered the impact of pollutants on the skin-scale barrier. The present proteome data are the basis of the findings discussed in the associated research article "Proteomics of sea bass skin-scales exposed to the emerging pollutant fluoxetine compared to estradiol" [1]. Juvenile sea bass were exposed by intraperitoneal injections to: a) the antidepressant fluoxetine (FLX), a widely prescribed psychotropic drug and an emerging pollutant; b) the natural estrogen 17 beta-estradiol (E2) and c) the vehicle, coconut oil (control). The scale proteome of fish exposed to these compounds for 5 days was analysed using quantitative label-free proteomics technology SWATH-MS (sequential windowed data-independent a cquisition of the total high-resolution-mass spectra). The proteome data generated was submitted to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD020983. LC-MS data from pooled protein extracts from the scales of all experimental groups was acquired using information-dependent acquisition (IDA) and 1,254 proteins were identified by searching against the sea bass genome database. 715 proteins were quantified by SWATH acquisition, and 213 proteins had modified levels (p < 0.05) between the E2- or FLX-exposed fish compared to the control. The main biological processes and KEGG pathways affected by E2 or FLX treatments were identified using Cytoscape/ClueGO enrichment analyses. (c) 2022 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/)

2022-04Journal article

Open access

First evidence of dermo-protective activity of marine sulfur-containing histidine compounds

Publication . Brancaccio, Mariarita; Milito, Alfonsina; S B Viegas, Carla; Palumbo, Anna; Simes, Dina; Castellano, Immacolata

Among natural products, ovothiol (ovo), produced by marine invertebrates, bacteria, and microalgae, is receiving increasing interest for its unique antioxidant properties. Recently, ovo has been shown to exhibit anti-inflammatory activity in an in vitro model of endothelial dysfunction and in an in vivo model of liver fibrosis.The aim of this study was to evaluate the effect of ovo and its precursor 5-thiohistidine (5-thio) in comparison with ergothioneine (erg), in human skin cells and tissues upon inflammation. We used both an in vitro and ex vivo model of human skin, represented by a keratinocytes cell line (HaCaT) and skin biopsies, respectively. We observed that ovo, 5-thio, and erg were not cytotoxic in HaCaT cells, but instead exerted a protective function against TNF-alpha-induced inflammation. In order to get insights on their mechanism of action, we performed western blot analysis of ERK and JNK, as well as sub-cellular localization of Nrf2, a key mediator of the anti-inflammatory response. The results indicated that the pre-treatment with ovo, 5-thio, and erg differently affected the phosphorylation of ERK and JNK. However, all the three molecules promoted the accumulation of Nrf2 in the nucleus of HaCaT cells. In addition, gene expression analysis by RTqPCR and ELISA assays performed in ex vivo human skin tissues pre-treated with thiohistidines and then inflamed with IL-1 beta revealed a significant downregulation of IL-8, TNF-alpha and COX-2 genes and a concomitant significant decrease in the cytokines IL-6, IL-8 and TNF-alpha production. Moreover, the protective action of ovo and 5-thio resulted to be stronger when compared with dexamethasone, a corticosteroid drug currently used to treat skin inflammatory conditions.Our findings suggest that ovo and 5-thio can ameliorate skin damage and may be used to develop natural skin care products to prevent the inflammatory status induced by environmental stressors and aging.

2022-11Journal article

Restricted access

A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)

Publication . Louro, Bruno; De Moro, Gianluca; Garcia, Carlos; Cox, Cymon; Veríssimo, Ana; Sabatino, Stephen J.; Santos, António M.; Canario, A.V.M.

The European sardine (Sardina pilchardus Walbaum, 1792) is culturally and economically important throughout its distribution. Monitoring studies of sardine populations report an alarming decrease in stocks due to overfishing and environmental change, which has resulted in historically low captures along the Iberian Atlantic coast. Important biological and ecological features such as population diversity, structure, and migratory patterns can be addressed with the development and use of genomics resources.

2019Journal article

Open access