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The microbial rare biosphere: current concepts, methods and ecological principles

2021-01Review Restricted access
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dc.contributor.authorPascoal, Francisco
dc.contributor.authorCosta, Rodrigo
dc.contributor.authorMagalhaes, Catarina
dc.date.accessioned2021-09-08T10:58:14Z
dc.date.available2021-09-08T10:58:14Z
dc.date.issued2021-01
dc.description.abstractOur ability to describe the highly diverse pool of low abundance populations present in natural microbial communities is increasing at an unprecedented pace. Yet we currently lack an integrative view of the key taxa, functions and metabolic activity which make-up this communal pool, usually referred to as the 'rare biosphere', across the domains of life. In this context, this review examines the microbial rare biosphere in its broader sense, providing an historical perspective on representative studies which enabled to bridge the concept from macroecology to microbial ecology. It then addresses our current knowledge of the prokaryotic rare biosphere, and covers emerging insights into the ecology, taxonomy and evolution of low abundance microeukaryotic, viral and host-associated communities. We also review recent methodological advances and provide a synthetic overview on how the rare biosphere fits into different conceptual models used to explain microbial community assembly mechanisms, composition and function.
dc.description.sponsorshipPortuguese Science and Technology Foundation (FCT)Portuguese Foundation for Science and Technology [PTDC/CTA-AMB/30997/2017]; FCT-Foundation for Science and TechnologyPortuguese Foundation for Science and Technology [UIDB/04423/2020, UIDP/04423/2020, UIDB/04565/2020]
dc.description.versioninfo:eu-repo/semantics/publishedVersion
dc.identifier.doi10.1093/femsec/fiaa227
dc.identifier.issn0168-6496
dc.identifier.urihttp://hdl.handle.net/10400.1/17066
dc.language.isoeng
dc.peerreviewedyes
dc.publisherOXFORD UNIV PRESS
dc.relationInterdisciplinary Centre of Marine and Environmental Research
dc.relationInterdisciplinary Centre of Marine and Environmental Research
dc.relationInstitute for Bioengineering and Biosciences
dc.subjectHistory of biological rarity
dc.subjectCommunity assembly
dc.subjectRare biosphere functions
dc.subjectRare microeukaryotes
dc.subjectRare viruses
dc.subjectHost-microbe interactions
dc.subject.otherMicrobiology
dc.titleThe microbial rare biosphere: current concepts, methods and ecological principles
dc.typereview
dspace.entity.typePublication
oaire.awardTitleInterdisciplinary Centre of Marine and Environmental Research
oaire.awardTitleInterdisciplinary Centre of Marine and Environmental Research
oaire.awardTitleInstitute for Bioengineering and Biosciences
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/PTDC%2FCTA-AMB%2F30997%2F2017/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04423%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDP%2F04423%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04565%2F2020/PT
oaire.citation.issue1
oaire.citation.startPagefiaa227
oaire.citation.titleFems Microbiology Ecology
oaire.citation.volume97
oaire.fundingStream3599-PPCDT
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
person.familyNameda Silva Costa
person.givenNameRodrigo
person.identifier115920
person.identifier.ciencia-id5917-D500-D251
person.identifier.orcid0000-0002-5932-4101
person.identifier.ridN-7274-2013
person.identifier.scopus-author-id7203063627
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsrestrictedAccess
rcaap.typereview
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