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Meta-analysis of northeast Atlantic marine taxa shows contrasting phylogeographic patterns following post-LGM expansions

2018-09Journal article Open Access
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dc.contributor.authorJenkins, Tom L.
dc.contributor.authorCastilho, Rita
dc.contributor.authorStevens, Jamie R.
dc.date.accessioned2018-12-07T14:58:10Z
dc.date.available2018-12-07T14:58:10Z
dc.date.issued2018-09
dc.description.abstractBackground. Comparative phylogeography enables the study of historical and evolutionary processes that have contributed to shaping patterns of contemporary genetic diversity across co-distributed species. In this study, we explored genetic structure and historical demography in a range of coastal marine species across the northeast Atlantic to assess whether there are commonalities in phylogeographic patterns across taxa and to evaluate whether the timings of population expansions were linked to the Last Glacial Maximum (LGM). Methods. A literature search was conducted using Web of Science. Search terms were chosen to maximise the inclusion of articles reporting on population structure and phylogeography from the northeast Atlantic; titles and abstracts were screened to identify suitable articles within the scope of this study. Given the proven utility of mtDNA in comparative phylogeography and the availability of these data in the public domain, a meta-analysis was conducted using published mtDNA gene sequences. A standardised methodology was implemented to ensure that the genealogy and demographic history of all mtDNA datasets were reanalysed in a consistent and directly comparable manner. Results. Mitochondrial DNA datasets were built for 21 species. The meta-analysis revealed significant population differentiation in 16 species and four main types of haplotype network were found, with haplotypes in some species unique to specific geographical locations. A signal of rapid expansion was detected in 16 species, whereas five species showed evidence of a stable population size. Corrected mutation rates indicated that the majority of expansions were estimated to have occurred after the earliest estimate for the LGM (similar to 26.5 Kyr), while few expansions were estimated to have pre-dated the LGM. Conclusion. This study suggests that post-LGM expansion appeared to be common in a range of marine taxa, supporting the concept of rapid expansions after the LGM as the ice sheets started to retreat. However, despite the commonality of expansion patterns in many of these taxa, phylogeographic patterns appear to differ in the species included in this study. This suggests that species-specific evolutionary processes, as well as historical events, have likely influenced the distribution of genetic diversity of marine taxa in the northeast Atlantic.
dc.identifier.doi10.7717/peerj.5684
dc.identifier.issn2167-8359
dc.identifier.urihttp://hdl.handle.net/10400.1/11893
dc.language.isoeng
dc.peerreviewedyes
dc.publisherPeerj Inc
dc.subjectLast Glacial Maximum
dc.subjectMitochondrial-Dna Phylogeography
dc.subjectPopulation-Structure
dc.subjectEastern Atlantic
dc.subjectEnglish-Channel
dc.subjectR Package
dc.subjectSea
dc.subjectConnectivity
dc.subjectPleistocene
dc.subjectGenetics
dc.titleMeta-analysis of northeast Atlantic marine taxa shows contrasting phylogeographic patterns following post-LGM expansions
dc.typejournal article
dspace.entity.typePublication
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/5876/UID%2FMulti%2F04326%2F2013/PT
oaire.citation.startPagee5684
oaire.citation.titlePeerj
oaire.citation.volume6
oaire.fundingStream5876
person.familyNameCastilho
person.givenNameRita
person.identifier452212
person.identifier.ciencia-id0513-0407-A6C1
person.identifier.orcid0000-0003-0727-3688
person.identifier.ridB-6185-2008
person.identifier.scopus-author-id56271196600
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsopenAccess
rcaap.typearticle
relation.isAuthorOfPublication051f68ec-18e0-4008-b06d-bf4b996fa098
relation.isAuthorOfPublication.latestForDiscovery051f68ec-18e0-4008-b06d-bf4b996fa098
relation.isProjectOfPublication868b4818-3efa-4edb-9202-c464d64fd38f
relation.isProjectOfPublication.latestForDiscovery868b4818-3efa-4edb-9202-c464d64fd38f

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