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European sea bass (Dicentrarchus labrax) skin and scale transcriptomes

2017-10Journal article Open access
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dc.contributor.authorPinto, Patricia IS
dc.contributor.authorThorne, Michael A. S.
dc.contributor.authorPower, Deborah
dc.date.accessioned2019-11-20T15:07:18Z
dc.date.available2019-11-20T15:07:18Z
dc.date.issued2017-10
dc.description.abstractFish skin and their appendages, the mineralized scales, are important organs for protection and homeostasis, but little is known about their specific transcript or protein repertoire. This study used RNA-seq to generate transcriptome data for skin and scales in the European sea bass (Dicentrarchus labrax), an important species for fisheries and aquaculture. RNA was extracted from the pectoral skin and from scales collected above the midline of immature one-year old sea bass. More than 20 x 10(6) reads were obtained for each tissue, using RNA-seq Illumina technology. De novo assembly resulted in 31,842 transcripts (of 500 base pairs or greater) for skin and 20,423 transcripts for scale. This dataset provides a useful resource for both aquaculture and fish conservation studies and for research into the physiology and molecular biology of fish skin and scales. (C) 2017 Elsevier B.V. All rights reserved.
dc.description.sponsorshipFoundation for Science and Technology of Portugal (FCT) [PTDC/AAG-GLO/4003/2012, CCMAR/Multi/04326/2013, SFRH/BPD/84033/2012]
dc.identifier.doihttps://doi.org/10.1016/j.margen.2017.05.002
dc.identifier.issn1874-7787
dc.identifier.urihttp://hdl.handle.net/10400.1/12974
dc.language.isoeng
dc.peerreviewedyes
dc.publisherElsevier
dc.relationE2SCALE: Scaling-down estrogenic responses in fish
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/4.0/
dc.subjectRegeneration
dc.subjectExpression
dc.subjectFish
dc.subjectRNA-seq
dc.subjectTeleost fish
dc.subjectFish scale
dc.subjectIntegument
dc.titleEuropean sea bass (Dicentrarchus labrax) skin and scale transcriptomes
dc.typejournal article
dspace.entity.typePublication
oaire.awardTitleE2SCALE: Scaling-down estrogenic responses in fish
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/PTDC%2FAAG-GLO%2F4003%2F2012/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/5876/UID%2FMulti%2F04326%2F2013/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/SFRH/SFRH%2FBPD%2F84033%2F2012/PT
oaire.citation.endPage37
oaire.citation.startPage35
oaire.citation.titleMarine Genomics
oaire.citation.volume35
oaire.fundingStream3599-PPCDT
oaire.fundingStream5876
oaire.fundingStreamSFRH
person.familyNamePinto
person.familyNamePower
person.givenNamePatricia IS
person.givenNameDeborah Mary
person.identifier643457
person.identifier.ciencia-idE51D-5CCB-B1C6
person.identifier.ciencia-id891A-8A44-3CAE
person.identifier.orcid0000-0001-7854-3898
person.identifier.orcid0000-0003-1366-0246
person.identifier.ridM-3817-2013
person.identifier.scopus-author-id10240774300
person.identifier.scopus-author-id7101806760
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsopenAccess
rcaap.typearticle
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relation.isAuthorOfPublicationc68f5ffb-63f6-4c70-8957-29e464fb59c0
relation.isAuthorOfPublication.latestForDiscovery64bc526e-5281-44e5-91eb-5743436109f9
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