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Having a BLAST: searchable transcriptome resources for the gilthead sea bream and the European sea bass

2016-12Journal article Restricted access
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dc.contributor.authorLouro, Bruno
dc.contributor.authorMarques, João Pedro
dc.contributor.authorPower, Deborah
dc.contributor.authorCanário, Adelino V. M.
dc.date.accessioned2017-04-07T15:55:38Z
dc.date.available2017-04-07T15:55:38Z
dc.date.issued2016-12
dc.description.abstractThe gilthead sea bream (Sparus aurata) and the European sea bass (Dicentrarchus labrax) are the most important aquaculture species in the Mediterranean Sea and since the last decade it has been seen an exponential increase in their available molecular resources. In order to improve accessibility to transcriptome resources, Expressed Sequence Tags (ESTs), mRNA sequences and raw read sequences were assembled and deposited in BLAST queryable databases. The publicly available sea bream and sea bass sequences (6.4 and 247.5 million) generated 45,094 and 68,117 assembled sequences, with, respectively, arithmetic mean size of 998 and 2125 bp and N50 of 1302 and 2966 bp. The assemblies will be regularly updated and new analytical tools added to the web server at http://sea.ccmar.ualg.pt. (C) 2016 Elsevier B.V. All rights reserved.
dc.identifier.doi10.1016/j.margen.2016.10.004
dc.identifier.issn1874-7787
dc.identifier.otherAUT: DPO00386; ACA00258;
dc.identifier.urihttp://hdl.handle.net/10400.1/9182
dc.language.isoeng
dc.peerreviewedyes
dc.relationTRANSCRIPTOMIC RESPONSES TO THERMAL AND OSMOREGULATORY CHALLENGES OF ANTARCTIC NOTOTHENIOID FISH: AN INSIGHT INTO RESPONSES TO GLOBAL CHANGE AND GENOME EVOLUTION
dc.relation.isbasedonWOS:000390744100008
dc.titleHaving a BLAST: searchable transcriptome resources for the gilthead sea bream and the European sea bass
dc.typejournal article
dspace.entity.typePublication
oaire.awardTitleTRANSCRIPTOMIC RESPONSES TO THERMAL AND OSMOREGULATORY CHALLENGES OF ANTARCTIC NOTOTHENIOID FISH: AN INSIGHT INTO RESPONSES TO GLOBAL CHANGE AND GENOME EVOLUTION
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/PTDC%2FMAR%2F121279%2F2010/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/5876/UID%2FMulti%2F04326%2F2013/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT//SFRH%2FBPD%2F89889%2F2012/PT
oaire.citation.endPage71
oaire.citation.startPage67
oaire.citation.titleMarine Genomics
oaire.citation.volume30
oaire.fundingStream3599-PPCDT
oaire.fundingStream5876
person.familyNameLouro
person.familyNamePower
person.familyNameCanario
person.givenNameBruno
person.givenNameDeborah Mary
person.givenNameAdelino
person.identifier143624
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person.identifier.orcid0000-0001-8164-581X
person.identifier.orcid0000-0003-1366-0246
person.identifier.orcid0000-0002-6244-6468
person.identifier.ridC-7942-2009
person.identifier.scopus-author-id16028940200
person.identifier.scopus-author-id7101806760
person.identifier.scopus-author-id56568523700
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsrestrictedAccess
rcaap.typearticle
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