Browsing by Author "Gandra, Miguel"
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- Assessing data bias in visual surveys from a cetacean monitoring programmePublication . Oliveira-Rodrigues, Cláudia; Correia, Ana M.; Valente, Raul; Gil, Ágatha; Gandra, Miguel; Liberal, Marcos; Rosso, Massimiliano; Pierce, Graham; Sousa-Pinto, IsabelLong-term monitoring datasets are fundamental to understand physical and ecological responses to environmental changes, supporting management and conservation. The data should be reliable, with the sources of bias identified and quantified. CETUS Project is a cetacean monitoring programme in the Eastern North Atlantic, based on visual methods of data collection. This study aims to assess data quality and bias in the CETUS dataset, by 1) applying validation methods, through photographic confirmation of species identification; 2) creating data quality criteria to evaluate the observer's experience; and 3) assessing bias to the number of sightings collected and to the success in species identification. Through photographic validation, the species identification of 10 sightings was corrected and a new species was added to the CETUS dataset. The number of sightings collected was biased by external factors, mostly by sampling effort but also by weather conditions. Ultimately, results highlight the importance of identifying and quantifying data bias, while also yielding guidelines for data collection and processing, relevant for species monitoring programmes based on visual methods.
- A dataset of cetacean occurrences in the Eastern North AtlanticPublication . Correia, Ana M.; Gandra, Miguel; Liberal, Marcos; Valente, Raul; Gil, Ágatha; Rosso, Massimiliano; Pierce, Graham J.; Sousa-Pinto, IsabelThe CETUS project is a cetacean monitoring program that takes advantage of cargo ships to undertake survey routes between Continental Portugal, Macaronesian archipelagos and West Africa. From 2012 to 2017, over 50 volunteers participated in the program, actively surveying more than 124.000 km, mostly beyond national jurisdictions in the high seas, for which little or no previous data existed. In total, the collection comprises 3058 georeferenced transect lines and 8913 positions, which are associated with 2833 cetacean sightings, 362 occurrences of other pelagic megafauna, 5260 estimates of marine traffic and 8887 weather observations. This dataset may provide new insights into the distribution of marine mammals in the Eastern North Atlantic and was published following the OBIS-ENV-DATA format (with the most recent biodiversity data standards at the time of writing). Consequently, it may serve as a model for similar visual line transect data collections yet to be published.
- Depth and temperature preferences of meagre, argyrosomus regius, as revealed by satellite telemetryPublication . Winkler, Alexander; Astrid Bovim, Lily; Macena, Bruno C. L.; Gandra, Miguel; Erzini, Karim; Afonso, Pedro; Abecasis, DavidArgyrosomus regius (commonly referred to as meagre), is one of Europe's largest coastal bony fish species and supports important recreational and commercial fisheries in the Atlantic and Mediterranean coasts. Demand for this species, and more recently for their swim bladders, has led to regional population declines and growing importance as an aquaculture species. Despite intense research in captivity, little is known about the spatial ecology of A. regius's wild population, including basic information such as vertical migrations and depth/temperature preferences. Previous research based on indirect data suggests a seasonal habitat shift from shallow to deeper waters, but this has never been validated through direct high-resolution movement data. In this study, we tagged 13 adult A. regius with pop-up satellite archival tags in the South of Portugal, which successfully returned data from 11 individuals including high-resolution data from six recovered tags (mean, range: 167 days, 28-301 days). We found that adults of this population spend 95.2% of their time between 5 and 75 m depth (mean +/- SD, 30.9m +/- 18.3m) and do not venture beyond 125 m. Across seasons, A. regius move across water temperatures between 13.3 and 24.8 degrees C with a preferred thermal range between 14 and 18 degrees C where they spent 75.4% of their time. The inferential modelling using this electronic data validated previous hypotheses by showing significant differences between a shallower and warmer summer habitat vs. a deeper and cooler winter habitat. Visual investigation of the diel effects on depth preferences suggests subtle changes in depth use between day and night during the warmer months of the year. We speculate that these patterns are in response to the species' behavioural ecology and physiology, reflecting the seasonal changes in water stratification and presence of prey, as well as on the species reproduction, which results in summer spawning aggregations in shallower areas.
- Diel and seasonal changes in the spatial behaviour of a soft-sediment fish (Solea senegalensis) inside a marine reservePublication . Gandra, Miguel; Erzini, Karim; Abecasis, DavidThe protection provided by marine reserves directly depends on the short and long-term movement patterns of local organisms. Although there has been an increase in research assessing the behavioural patterns of fishes in reef-based habitats, there is still a paucity of studies addressing the benefits of marine protected areas (MPAs) for soft-sediment species. Here, we investigated both diel and seasonal shifts in spatial behaviour of the Senegalese sole, Solea senegalensis, within a recently-established marine reserve using long-term passive acoustic telemetry. Results showed variable levels of site attachment, with nearly half of the fish (n = 8) disappearing from the monitored area within 30 days, and the remaining (n = 9) being detected for periods up to 293 days and spending 95% of their time within an average area of 0.88 ± 0.46 km2. Although detection frequency was higher during daytime periods, the larger home range areas and greater movement observed during nighttime periods are consistent with a nocturnal activity regime, which might increase the vulnerability of S. senegalensis to illegal fishing. Additionally, patterns observed during the spawning season suggest the existence of shifts in habitat use linked with reproductive activity, opening the door to further research on soles' fine-scale interaction dynamics. Overall, this study provides novel insights into the ecology of a flatfish species and suggests that small no-take areas encompassing suitable soft-sediment habitats can offer adequate protection to at least part of the Senegalese sole population.
- Intra- and interspecific associations in two predatory reef fishes at a shallow seamountPublication . Gandra, Miguel; Afonso, Pedro; Fontes, Jorgethe spatial dynamics of marine populations are shaped by habitat availability, environmental variability and individual interactions, particularly when multiple species share limited habitat such as patchy offshore reefs. the yellowmouth barracuda Sphyraena viridensis and the almaco jack Seriola rivoliana are the 2 most abundant bentho-pelagic reef predators in the Azores archipelago (central North Atlantic). They aggregate at shallow offshore seamounts, and largely share diet preferences, but very little is known about how habitat and resources are shared by these predators intra- and inter-specifically. Here we use long-term (over 3 yr) passive acoustic telemetry to investigate the patterns of activity, space use and associative behaviour at an isolated, small shallow seamount. By quantifying fine-scale spatiotemporal overlaps and performing null model randomization tests, we found evidence of non-random associations, mostly between conspecifics of both species, as well as shifts in diel and seasonal patterns of space occupancy. Both species were detected more often during spring, and appear to be more active during daytime, suggesting the absence of fine-scale temporal habitat partitioning. Additionally, we found evidence of size-dependent spatial behaviour in almaco jack, with similarly sized individuals co-occurring more often and larger specimens being more infrequently detected. This study quantitatively assesses individual associations using solely presence-absence data collected through passive acoustic telemetry, showing the potential of this approach in a broader application to a significant number of past and ongoing studies, even if many were not originally designed to study this important aspect of fish ecology.
- Movement patterns and connectivity of argyrosomus regius along the southwest coast of Portugal using network analysisPublication . Fanna, Samuele; Gandra, Miguel; Kraft, Sebastian; Martínez Ramírez, Lucas; Vilas, Cesar; Winkler, Alexander; Abecasis, DavidThe meagre (Argyrosomus regius) is a large teleost inhabiting the coastal waters of the East Atlantic Ocean and the Mediterranean Sea. Along the Iberian Peninsula, it is frequently targeted by both commercial and recreational fisheries. Despite its relevance, information on its population structure and movement ecology has been scarce until recently. While these studies have provided a foundation, information on the main migratory corridors along the coast is still missing. The current study aimed to identify primary migratory routes, aggregations, and residency sites along the Southwest coast of Portugal. Forty-nine adult meagres were captured and tagged with acoustic transmitters between 2018 and 2023. Their movement was monitored from 122 acoustic receivers, grouped into 25 arrays, which were deployed throughout the Gulf of C´adiz and along the Southwest coast of Portugal. A spatial network approach was applied to analyse these data. The locations near the tagging site and along the Southwest coast displayed high values of eigenvector and betweenness centralities, indicating their crucial role in facilitating the connectivity of adult meagre between the two regions. Furthermore, co-occurrences outside the spawning season highlight their role as potential feeding grounds. The number of detections and co-occurrences near the Guadiana Estuary provides further evidence that the location may serve as a spawning ground, although additional data are needed to confirm this. Our findings expand previous research, identifying key passages and aggregation sites for meagre along the coast. These results can inform management and conservation efforts, particularly in the context of marine spatial planning.
- Multidisciplinary estimates of connectivity and population structure suggest the use of multiple units for the conservation and management of meagre, Argyrosomus regiusPublication . Abecasis, David; Ogden, R.; Winkler, Alexander; Gandra, Miguel; Khallahi, B.; Diallo, M.; Cabrera-Castro, R.; Weiller, Y.; Erzini, Karim; Afonso, P.; Assis, JorgeInformation on population structure and connectivity of targeted species is key for proper implementation of spatial conservation measures. We used a combination of genomics, biophysical modelling, and biotelemetry to infer the population structure and connectivity of Atlantic meagre, an important fisheries resource throughout its distribution. Genetic samples from previously identified Atlantic spawning locations (Gironde, Tejo, Guadalquivir, Banc d'Arguin) and two additional regions (Algarve and Senegal) were analysed using genome-wide SNP-genotyping and mitochondrial DNA analyses. Biophysical models were conducted to investigate larval dispersal and connectivity from the known Atlantic spawning locations. Additionally, thirteen fish were double-tagged with biotelemetry transmitters off the Algarve (Portugal) to assess movement patterns and connectivity of adult individuals. This multidisciplinary approach provided a robust overview of meagre population structure and connectivity in the Atlantic. Nuclear SNP-genotyping showed a clear differentiation between the European and African populations, with significant isolation of the few known Atlantic spawning sites. The limited level of connectivity between these subpopulations is potentially driven by adults, capable of wide-ranging movements and connecting sites 500 km apart, as evidenced by tagging studies, whilst larval dispersal inferred by modelling is much more limited (average of 52 km; 95% of connectivity events up to 174 km). Our results show sufficient evidence of population structure, particularly between Africa and Europe but also within Europe, for the meagre to be managed as separate stocks. Additionally, considering the low degree of larvae connectivity, the implementation of marine protected areas in key spawning sites could be crucial towards species sustainability.
- Reduced global genetic differentiation of exploited marine fish speciesPublication . Gandra, Miguel; Assis, Jorge; Ramos Martins, Manuel; Abecasis, DavidKnowledge on genetic structure is key to understand species connectivity patterns and to define the spatiotemporal scales over which conservation management plans should be designed and implemented. The distribution of genetic diversity (within and among populations) greatly influences species ability to cope and adapt to environmental changes, ultimately determining their long-term resilience to ecological disturbances. Yet, the drivers shaping connectivity and structure in marine fish populations remain elusive, as are the effects of fishing activities on genetic subdivision. To investigate these questions, we conducted a meta-analysis and compiled genetic differentiation data (FST/ΦST estimates) for more than 170 fish species from over 200 published studies globally distributed. We modeled the effects of multiple life-history traits, distance metrics, and methodological factors on observed population differentiation indices and specifically tested whether any signal arising from different exposure to fishing exploitation could be detected. Although the myriad of variables shaping genetic structure makes it challenging to isolate the influence of single drivers, results showed a significant correlation between commercial importance and genetic structure, with widespread lower population differentiation in commercially exploited species. Moreover, models indicate that variables commonly used as proxy for connectivity, such as larval pelagic duration, might be insufficient, and suggest that deep-sea species may disperse further. Overall, these results contribute to the growing body of knowledge on marine genetic connectivity and suggest a potential effect of commercial fisheries on the homogenization of genetic diversity, highlighting the need for additional research focused on dispersal ecology to ensure long-term sustainability of exploited marine species.
- Residency and space use estimation methods based on passive acoustic telemetry dataPublication . Kraft, Sebastian; Gandra, Miguel; Lennox, R. J.; Mourier, J.; Winkler, Alexander; Abecasis, DavidAcoustic telemetry has helped overcome many of the challenges faced when studying the movement ecology of aquatic species, allowing to obtain unprecedented amounts of data. This has made it into one of the most widely used methods nowadays. Many ways to analyse acoustic telemetry data have been made available and deciding on how to analyse the data requires considering the type of research objectives, relevant properties of the data (e.g., resolution, study design, equipment), habits of the study species, researcher experience, among others. To ease this decision process, here we showcase (1) some of the methods used to estimate pseudo-positions and positions from raw acoustic telemetry data, (2) methods to estimate residency and (3) methods to estimate two-dimensional home and occurrence range using geometric or hull-based methods and density-distribution methods, a network-based approach, and three-dimensional methods. We provide examples of some of these were tested using a sample of real data. With this we intend to provide the necessary background for the selection of the method(s) that better fit specific research objectives when using acoustic telemetry.
- Tagging mortality in acoustic telemetry studies: insights from a multispecies analysisPublication . Martínez Ramírez, Lucas; Bentes, Luis; Dias Almeida Cardoso, André Filipe; Erzini, Karim; Gandra, Miguel; Kraft, Sebastian; Winkler, Alexander; Abecasis, DavidThe widespread adoption of acoustic telemetry has transformed our understanding of marine species' behavior and movement ecology. However, accurately interpreting telemetry data, especially concerning tagging mortality, is essential for drawing valid conclusions. In this study, we scrutinized tagging mortality in 223 individuals across 14 species and evaluated the impact of tagging methodologies, including capture method and size effects. Results reveal high tagging survival rates overall, attributable to the resiliency of the studied species and the rigorous animal welfare protocols followed during tagging procedures. Our results highlight the importance of tailoring array designs to the specific mobility patterns of the studied species for accurate survival assessments. This research contributes to generalizing mortality assessments and clearing the path for more precise and reliable telemetry studies in the future.