Percorrer por autor "Peng, Maoxiao"
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- Core genes of biomineralization and cis-regulatory long non-coding RNA regulate shell growth in bivalvesPublication . Peng, Maoxiao; Cardoso, João; Pearson, Gareth Anthony; Canario, Adelino; Power, Deborah MaryBivalve molluscs are abundant in marine and freshwater systems and contribute essential ecosystem services. They are characterized by an exuberant diversity of biomineralized shells and typically have two symmetric valves (a.k.a shells), but oysters (Ostreidae), some clams (Anomiidae and Chamidae) and scallops (Pectinida) have two asymmetrical valves. Predicting and modelling the likely consequences of ocean acidification on bivalve survival, biodiversity and aquaculture makes understanding shell biomineralization and its regulation a priority. Objectives: This study aimed to a) exploit the atypical asymmetric shell growth of some bivalves and through comparative analysis of the genome and transcriptome pinpoint candidate biomineralization-related genes and regulatory long non-coding RNAs (LncRNAs) and b) demonstrate their roles in regulating shell biomineralization/growth. Methods: Meta-analysis of genomes, de novo generated mantle transcriptomes or transcriptomes and proteomes from public databases for six asymmetric to symmetric bivalve species was used to identify biomineralization-related genes. Bioinformatics filtering uncovered genes and regulatory modules characteristic of bivalves with asymmetric shells and identified candidate biomineralization-related genes and lncRNAs with a biased expression in asymmetric valves. A shell regrowth model in oyster and gene silencing experiments, were used to characterize candidate gene function. Results: Shell matrix genes with asymmetric expression in the mantle of the two valves were identified and unique cis-regulatory lncRNA modules characterized in Ostreidae. LncRNAs that regulate the expression of the tissue inhibitor of metalloproteinases gene family (TIMPDR) and of the shell matrix protein domain family (SMPDR) were identified. In vitro and in vivo silencing experiments revealed the candidate genes and lncRNA were associated with divergent shell growth rates and modified the microstructure of calcium carbonate (CaCO3) crystals. Conclusion: LncRNAs are putative regulatory factors of the bivalve biomineralization toolbox. In the Ostreidae family of bivalves biomineralization-related genes are cis-regulated by lncRNA and modify the planar growth rate and spatial orientation of crystals in the shell.
- Differential tissue immune stimulation through immersion in bacterial and viral agonists in the Antarctic Notothenia rossiiPublication . Sousa, Carmen; Peng, Maoxiao; Guerreiro, Pedro; Cardoso, João; Chen, Liangbiao; Canario, Adelino; Power, DeborahThe genome evolution of Antarctic notothenioids has been modulated by their extreme environment over millennia and more recently by human -caused constraints such as overfishing and climate change. Here we investigated the characteristics of the immune system in Notothenia rossii and how it responds to 8 h immersion in viral (Poly I:C, polyinosinic: polycytidylic acid) and bacterial (LPS, lipopolysaccharide) proxies. Blood plasma antiprotease activity and haematocrit were reduced in Poly I:C-treated fish only, while plasma protein, lysozyme activity and cortisol were unchanged with both treatments. The skin and duodenum transcriptomes responded strongly to the treatments, unlike the liver and spleen which had a mild response. Furthermore, the skin transcriptome responded most to the bacterial proxy (cell adhesion, metabolism and immune response processes) and the duodenum (metabolism, response to stress, regulation of intracellular signal transduction, and immune system responses) to the viral proxy. The differential tissue response to the two proxy challenges is indicative of immune specialisation of the duodenum and the skin towards pathogens. NOD -like and C -type lectin receptors may be central in recognising LPS and Poly I:C. Other antimicrobial compounds such as iron and seleniumrelated genes are essential defence mechanisms to protect the host from sepsis. In conclusion, our study revealed a specific response of two immune barrier tissue, the skin and duodenum, in Notothenia rossii when exposed to pathogen proxies by immersion, and this may represent an adaptation to pathogen infective strategies.
- Domain-dependent evolution explains functional homology of protostome and deuterostome complement C3-like proteinsPublication . Peng, Maoxiao; Li, Zhi; Cardoso, João; Niu, Donghong; Liu, Xiaojun; Dong, Zhiguo; Li, Jiale; Power, DeborahComplement proteins emerged early in evolution but outside the vertebrate clade they are poorly characterized. An evolutionary model of C3 family members revealed that in contrast to vertebrates the evolutionary trajectory of C3-like genes in cnidarian, protostomes and invertebrate deuterostomes was highly divergent due to independent lineage and species-specific duplications. The deduced C3-like and vertebrate C3, C4 and C5 proteins had low sequence conservation, but extraordinarily high structural conservation and 2-chain and 3-chain protein isoforms repeatedly emerged. Functional characterization of three C3-like isoforms in a bivalve representative revealed that in common with vertebrates complement proteins they were cleaved into two subunits, b and a, and the latter regulated inflammation-related genes, chemotaxis and phagocytosis. Changes within the thioester bond cleavage sites and the a-subunit protein (ANATO domain) explained the functional differentiation of bivalve C3-like. The emergence of domain-related functions early during evolution explains the overlapping functions of bivalve C3-like and vertebrate C3, C4 and C5, despite low sequence conservation and indicates that evolutionary pressure acted to conserve protein domain organization rather than the primary sequence.
- Dopamine beta-hydroxylase and its role in regulating the growth and larval metamorphosis in Sinonovacula constrictaPublication . Li, Zhi; Niu, Donghong; Peng, Maoxiao; Xiong, Ya; Ji, Jie; Dong, Zhiguo; Li, JialeDopamine beta-hydroxylase (D beta H) plays a key role in the synthesis of catecholamines (CAs) in the neuroendocrine regulatory network. The D beta H gene was identified from the razor clam Sinonovacula constricta and referred to as ScD beta H. The ScD beta H gene is a copper type II ascorbate-dependent monooxygenase with a DOMON domain and two Cu2_monooxygen domains. ScD beta H transcript expression was abundant in liver and hemolymph. During early development, ScD beta H expression significantly increased at the umbo larval stage. Furthermore, the inhibitors and siRNA of D beta H were screened. After challenge with D beta H inhibitor, the larval metamorphosis and survival rates, and juvenile growth were obviously decreased. Under the siRNA stress, the larval metamorphosis and survival rates were also significantly decreased. Therefore, ScD beta H may play an important regulating role in larval metamorphosis and juvenile growth.
- Evolution and potential function in molluscs of neuropeptide and receptor homologues of the insect allatostatinsPublication . Li, Zhi; Cardoso, João; Peng, Maoxiao; Inácio, João P. S.; Power, DeborahThe allatostatins (ASTs), AST-A, AST-B and AST-C, have mainly been investigated in insects. They are a large group of small pleotropic alloregulatory neuropeptides that are unrelated in sequence and activate receptors of the rhodopsin G-protein coupled receptor family (GPCRs). The characteristics and functions of the homologue systems in the molluscs (Buccalin, MIP and AST-C-like), the second most diverse group of protostomes after the arthropods, and of high interest for evolutionary studies due to their less rearranged genomes remains to be explored. In the present study their evolution is deciphered in molluscs and putative functions assigned in bivalves through meta-analysis of transcriptomes and experiments. Homologues of the three arthropod AST-type peptide precursors were identified in molluscs and produce a larger number of mature peptides than in insects. The number of putative receptors were also distinct across mollusc species due to lineage and species-specific duplications. Our evolutionary analysis of the receptors identified for the first time in a mollusc, the cephalopod, GALR-like genes, which challenges the accepted paradigm that AST-AR/buccalin-Rs are the orthologues of vertebrate GALRs in protostomes. Tissue transcriptomes revealed the peptides, and their putative receptors have a widespread distribution in bivalves and in the bivalve Mytilus galloprovincialis, elements of the three peptide-receptor systems are highly abundant in the mantle an innate immune barrier tissue. Exposure of M. galloprovincialis to lipopolysaccharide or a marine pathogenic bacterium, Vibrio harveyi, provoked significant modifications in the expression of genes of the peptide precursor and receptors of the AST-C-like system in the mantle suggesting involvement in the immune response. Overall, our study reveals that homologues of the arthropod AST systems in molluscs are potentially more complex due to the greater number of putative mature peptides and receptor genes. In bivalves they have a broad and varying tissue distribution and abundance, and the elements of the AST-C-like family may have a putative function in the immune response.
- Evolution of chitin-synthase in molluscs and their response to ocean acidificationPublication . Cardoso, João; Power, Deborah Mary; Peng, MaoxiaoChitin-synthase (CHS) is found in most eukaryotes and has a complex evolutionary history. Research into CHS has mainly been in the context of biomineralization of mollusc shells an area of high interest due to the consequences of ocean acidification. Exploration of CHS at the genomic level in molluscs, the evolution of isoforms, their tissue distribution, and response to environmental challenges are largely unknown. Exploiting the extensive molecular resources for mollusc species it is revealed that bivalves possess the largest number of CHS genes (12-22) reported to date in eukaryotes. The evolutionary tree constructed at the class level of molluscs indicates four CHS Type II isoforms (A-D) probably existed in the most recent common ancestor, and Type II-A (Type II-A1/Type II-A-2) and Type II-C (Type II-C-1/Type II-C-2) underwent further differentiation. Non-specific loss of CHS isoforms occurred at the class level, and in some Type II (B-D groups) isoforms the myosin head domain, which is associated with shell formation, was not preserved and highly species-specific tissue expression of CHS isoforms occurred. These observations strongly support the idea of CHS functional diversification with shell biomineralization being one of several important functions. Analysis of transcriptome data uncovered the species-specific potential of CHS isoforms in shell formation and a species-specific response to ocean acidification (OA). The impact of OA was not CHS isoform-dependent although in Mytilus, Type I-B and Type II-D gene expression was down-regulated in both M. galloprovincialis and M. coruscus. In summary, during CHS evolution the gene family expanded in bivalves generating a large diversity of isoforms with different structures and with a ubiquitous tissue distribution suggesting that chitin is involved in many biological functions. These findings provide insight into CHS evolution in molluscs and lay the foundation for research into their function and response to environmental changes.
- Inland alkaline brackish water aquaculture of juvenile razor clam: survival, growth, physiology and immune responsesPublication . Peng, Maoxiao; Li, Zhi; Liu, Xiaojun; Niu, Donghong; Li, JialeIn this study, we investigated rearing and breeding razor clam (Sinonovacula constricta) in inland alkaline brackish water. During 45 days of the experiment in candidate target inland area brackish water (TBW), survival, growth, enzyme activity and immune responses were analysed. The results showed that shell length and weight were significantly inhibited in the TBW group (p <0.001). Although the cumulative mortality was 81.479 ± 7.028 (p < 0.001) at 15 days, it increased slowly to 92.915 ± 2.271 (p < 0.001) at 45 days. The enzyme activities of Na+/K+-ATPase, aspartate aminotransferase and superoxide dismutase peaked at 15 days, and juvenile S. constricta (JSC) may engaged in partial anaerobic metabolism or damage to gill tissue, which may explain the high mortality rate at this time. Additionally, the phagocytic ability of haemocytes was inhibited (p < 0.001), but the metabolic activity was enhanced (p < 0.001). This implies that 15 days was the peak of TBW stress, and stress gradually decreased by days 30 and 45. TBW affected metabolism, osmotic regulation, and immune responses. There was an independent ionic interaction perhaps effect on JSC, primarily through Na+/K+ rate. Approximately 7 % of animals adapted successfully to TBW after 45 days. In summary, S. constricta has a great potential in further anti-TBW conditions selective breeding research.
- Neuropeptides regulate shell growth in the Mediterranean mussel (Mytilus galloprovincialis)Publication . Li, Zhi; Peng, Maoxiao; Félix, Rute; Cardoso, João; Power, Deborah MaryIn bivalves, which are molluscs enclosed in a biomineralized shell, a diversity of neuropeptide precursors has been described but their involvement in shell growth has been largely neglected. Here, using a symmetric marine bivalve, the Mediterranean mussel (Mytilus galloprovincialis), we uncover a role for the neuroendocrine system and neuropeptides in shell production. We demonstrate that the mantle is rich in neuropeptide precursors and that a complex network of neuropeptide-secreting fibres innervates the mantle edge a region highly involved in shell growth. We show that shell damage and shell repair significantly modify neuropeptide gene expression in the mantle edge and the nervous ganglia (cerebropleural ganglia, CPG). When the CPG nerve commissure was severed, shell production was impaired after shell damage, and modified neuropeptide gene expression, the spatial organization of nerve fibres in the ganglia and mantle and biomineralization enzyme activity in the mantle edge. Injection of CALCIa and CALCIIa peptides rescued the impaired shell repair phenotype providing further support for their role in biomineralization. We propose that the regulatory mechanisms identified are likely to be conserved across bivalves and other shelled molluscs since they all share a similar nervous system, a common mantle biomineralization toolbox, and shell structure.
- Regulatory mechanism of bivalve shell biomineralization and its response to global climate changePublication . Peng, Maoxiao; Power, Deborah M.; Cardoso, João Carlos dos ReisBivalves are one of the most diverse animal groups in the ocean and are found everywhere on Earth. They provide important ecosystem services in the marine environment as they filter environmental waters but also contribute to the nutrient and carbon cycle and are a rich source of nutrients for humans and other animals. Aquaculture of marine bivalve is an economically important industry worldwide that is currently expanding and because bivalve production is environmental-friendly they can provide an alternative protein source to meet the growing demand for food by the growing world population. Bivalves are characterized by possessing two valves that form the shell that is secreted by the mantle which is essential for their survival since it protects them from the environment and predators but also serves as a store of minerals. How bivalves produce and maintain their shells has been the topic of many studies especially because this structure is considered to be highly sensitive to changes in the ocean environment as a consequence of climate change and environmental pollution compromising their existence and survival. However, the large biodiversity of bivalves, the limited number of species studied and the diversity of exuberant shells with different mineralized structures suggests that the mechanisms of shell formation and growth and their susceptibility to environmental stressors might be species-specific. The main objective of this thesis is to increase knowledge about bivalve shell biomineralization by exploring and comparing the molecular factors that regulate shell growth and maintenance and composition in two commercially important aquaculture species that occupy the same ecological niche but possess different shell morphologies the Pacific oyster (Magallana gigas) and the Mediterranean mussel (Mytilus galloprovincialis) using animal experimentation, and multi-omics analysis using available bivalve genomes and transcriptomes, biochemical and gene knock down approaches. The results of this thesis revealed that: 1) long non-coding RNAs (lncRNA) and non-matrix protein encoding genes are important factors in the regulation of shell matrix protein (SMP) and non-SMP genes that modify shell structure (Chapter 2), 2) shell growth in M. gigas and M. galloprovincialis is hampered by OA but the two animals respond differently and M. galloprovincialis employs a larger number of biomineralization genes and most likely invests more energy to maintain the shell (Chapter 3) and 3) there is a large diversity of CHS (Chitin-synthase) isoforms with a complex evolutionary history and that M. gigas and M. galloprovincialis (Chapter 4). The tissue distribution of CHS indicates a far more complex suite of actions than the production of part of the organic scaffold for calcium carbonate crystal deposition in the shell. Furthermore, CHS respond differently to OA implying plasticity in the response of chitin production and an involvement in modulating the production of the shell.
- Revisiting the evolution of family B1 GPCRs and ligands: insights from molluscaPublication . Cardoso, João; Mc Shane, Jennifer; Li, Zhi; Peng, Maoxiao; Power, Deborah MaryFamily B1 G protein-coupled receptors (GPCRs) are one of the most well studied neuropeptide receptor families since they play a central role in many biological processes including endocrine, gastrointestinal, cardiovascular and reproduction in animals. The genes for these receptors emerged from a common ancestral gene in bilaterian genomes and evolved via gene/genome duplications and deletions in vertebrate and invertebrate genomes. Their existence and function have mostly been characterized in vertebrates and few studies exist in invertebrate species. Recently, an increased interest in molluscs, means a series of genomes have become available, and since they are less modified than insect and nematode genomes, they are ideal to explore the origin and evolution of neuropeptide gene families. This review provides an overview of Family B1 GPCRs and their peptide ligands and incorporates new data obtained from Mollusca genomes and taking a comparative approach challenges existing models on their origin and evolution.