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  • The seagoing scientist's toolbox: integrated methods for quality control of marine geophysical data at sea
    Publication . Hamilton, Michael; Wessel, Paul; Luis, Joaquim; Taylor, Brian; Ko, Youngtak
    We announce a new and integrated system for planning and executing marine geophysical surveys and for scrutinizing and visualizing incoming shipboard data. The system incorporates free software designed for use by scientists and shipboard operators and pertains to underway geophysics and multibeam sonar surveys. Regarding underway data, a crucial first step in the approach is to reduce and merge incoming center beam depth, gravity, and towed magnetic data with navigation, then reformat to the standard exchange format. We are then able to apply established quality control methods including along-track and cross-track analyses to identify error sources and to incrementally build the candidate archive file as new data are acquired. Regarding multibeam data, these are subjected to both an automated error removal scheme for quick visualization and to subsequent ping editing in detail. The candidate archive file and sonar data are automatically and periodically updated and adapted for display in Google Earth, wherein survey planning is also carried out. Data layers are also updated automatically in Google Earth, allowing scientists to focus on visual inspection and interpretation of incoming data. By visualizing underway and sonar data together with reference gravity, magnetic, and bathymetry grids in Google Earth, data familiarity is enhanced and the likelihood of noticing extreme errors increased. We hope scientists will embrace these techniques so that each data set being submitted to a data repository is vetted by the seagoing science party.
  • Piece‐wise constant cluster modelling of dynamics of upwelling patterns
    Publication . Nascimento, Susana; Martins, Alexandre; Relvas, Paulo; Luis, Joaquim; Mirkin, Boris
    A comprehensive approach is presented to analyse season's coastal upwelling represented by weekly sea surface temperature (SST) image grids. Our three-stage data recovery clustering method assumes that the season's upwelling can be divided into shorter periods of stability, ranges, each to be represented by a constant core and variable shell parts. Corresponding clustering algorithms parameters are automatically derived by using the least-squares clustering criterion. The approach has been successfully applied to real-world SST data covering two distinct regions: Portuguese coast and Morocco coast, for 16 years each.
  • The generic mapping tools version 6
    Publication . Wessel, P.; Luis, Joaquim; Uieda, L.; Scharroo, R.; Wobbe, F.; Smith, W. H. F.; Tian, D.
    The Generic Mapping Tools (GMT) software is ubiquitous in the Earth and ocean sciences. As a cross-platform tool producing high-quality maps and figures, it is used by tens of thousands of scientists around the world. The basic syntax of GMT scripts has evolved very slowly since the 1990s, despite the fact that GMT is generally perceived to have a steep learning curve with many pitfalls for beginners and experienced users alike. Reducing these pitfalls means changing the interface, which would break compatibility with thousands of existing scripts. With the latest GMT version 6, we solve this conundrum by introducing a new "modern mode" to complement the interface used in previous versions, which GMT 6 now calls "classic mode." GMT 6 defaults to classic mode and thus is a recommended upgrade for all GMT 5 users. Nonetheless, new users should take advantage of modern mode to make shorter scripts, quickly access commonly used global data sets, and take full advantage of the new tools to draw subplots, place insets, and create animations.
  • Detection of speleothem growth bands with an open source geophysical software
    Publication . Veiga-Pires, C.; Moura, Delminda; Luis, Joaquim
    Speleothem growth bands are commonly referred as one of the parameters that are used for paleoclimate reconstructions. Accordingly, this work presents a new tool for detecting these bands based on the gray-scale image of the speleothem using the Mirone open source geophysical software.
  • The measurement of vitrinite reflectance with MatLab
    Publication . Fernandes, Paulo; Luis, Joaquim; Rodrigues, Sara; Marques, Manuela; Valentim, Bruno; Flores, Deolinda
    The measurement of vitrinite reflectance is widely used as an indicator of coal rank and organic maturation in source-rock studies. This is due to the regular change in reflectance properties of the vitrinite group during coalification.
  • Connections between upwelling patterns and phytoplankton variability under different coastal regimes in SW Iberia Peninsula
    Publication . Krug, Lilian; Silvano, Kathleen M.; Barbosa, Ana B.; Domingues, Rita B.; Galvão, Helena M.; Luis, Joaquim; Platt, Trevor; Relvas, Paulo; Sathyendranath, Shubha
    The region off southwestern Iberia (NE Atlantic) encompasses a wide variety of oceanographic regimes, including differently (geographic) oriented coastal areas impacted by upwelling, riverine inputs and submarine groundwater discharge, submarine canyons and seamounts, and open ocean waters, thereby potentially promoting zone-specific phytoplankton dynamics. Overall, this heterogeneous region is classified as being very sensitive to climate change, and climate-driven alterations (e.g., sea surface warming, changes in upwelling patterns and intensity) have been recently reported for the area. The present study aims to understand the contribution of upwelling to seasonal and interannual variability of coastal phytoplankton, using a remote sensing-based approach. Phytoplankton variability was evaluated using satellite-derived chlorophyll-a (Chl-a), as a proxy for phytoplankton biomass, and primary productivity (PP). Chl-a were obtained from merged SeaWiFS (Seaviewing Wide Field-of-view Sensor), MeRIS (Medium Resolution Imaging Spectrometer) and MODIS-Aqua (Moderate-resolution Imaging Spectroradiometer) sensors at Globcolour portal. PP data at 9.25 km resolution were derived from Eppley’s Vertically Generalized Production Model, based on SeaWiFS and MODIS-Aqua and available at the Ocean Productivity site. Upwelling intensity was estimated using the difference in sea surface temperature (SST) between off and nearshore zones. Advanced Very-High Resolution Radiometer (AVHRR) 4 km SST were obtained from Pathfinder database. Other phytoplankton environmental drivers, such as local (e.g., river flow) and global (e.g., North Atlantic Oscillation - NAO) climate variables, were also analysed. The study area was divided into subareas differently impacted by upwelling and riverine flow, and satellitederived data was averaged for each zone. Seasonal and interannual variability covering a 14-year time series (1998- 2011) for each variable/region were explored. Chl-a at offshelf locations was significantly lower than coastal areas, and exhibited a fairly stable unimodal annual cycle, with maximum during March. Coastal locations displayed more variable annual patterns, with spring and summer Chl-a maxima, reflecting the impact of upwelling events and freshwater inputs. In respect to interannual variability, NAO index and coastal Chl-a were negative and significantly correlated, with 1-month lag. Chl-a interannual trends were also correlated to local climate variables, namely riverine flow for the easternmost coastal zone. The correlation between upwelling intensity and phytoplankton off SW Iberia is region-dependent being less strong within regions dominated by riverine influence.
  • Long-term seismicity of the Reykjanes Ridge (North Atlantic) recorded by a regional hydrophone array
    Publication . Goslin, J.; Lourenço, Nuno; Dziak, R. P.; Bohnenstiehl, D. R.; Haxel, J.; Luis, Joaquim
    The seismicity of the northern Mid-Atlantic Ridge was recorded by two hydrophone networks moored in the sound fixing and ranging (SOFAR) channel, on the flanks of the Mid-Atlantic Ridge, north and south of the Azores. During its period of operation (05/2002-09/2003), the northern 'SIRENA' network, deployed between latitudes 40 degrees 20'N and 50 degrees 30'N, recorded acoustic signals generated by 809 earthquakes on the hotspot-influenced Reykjanes Ridge. This activity was distributed between five spatio-temporal event clusters, each initiated by a moderate-to-large magnitude (4.0-5.6 M) earthquake. The rate of earthquake occurrence within the initial portion of the largest sequence (which began on 2002 October 6) is described adequately by a modified Omori law aftershock model. Although this is consistent with triggering by tectonic processes, none of the Reykjanes Ridge sequences are dominated by a single large-magnitude earthquake, and they appear to be of relatively short duration (0.35-4.5 d) when compared to previously described mid-ocean ridge aftershock sequences. The occurrence of several near-equal magnitude events distributed throughout each sequence is inconsistent with the simple relaxation of main shock-induced stresses and may reflect the involvement of magmatic or fluid processes along this deep (>2000 m) section of the Reykjanes Ridge.
  • Spatiotemporal distribution of the seismicity along the Mid-Atlantic Ridge north of the Azores from hydroacoustic data: Insights into seismogenic processes in a ridge-hot spot context
    Publication . Goslin, J.; Perrot, J.; Royer, J. -Y.; Martin, C.; Lourenco, N.; Luis, J.; Dziak, R. P.; Matsumoto, H.; Haxel, J.; Fowler, M. J.; Fox, C. G.; Lau, A. T. -K.; Bazin, S.
    The seismicity of the North Atlantic was monitored from May 2002 to September 2003 by the 'SIRENA array' of autonomous hydrophones. The hydroacoustic signals provide a unique data set documenting numerous low-magnitude earthquakes along the section of the Mid-Atlantic Ridge (MAR) located in a ridge-hot spot interaction context. During the experiment, 1696 events were detected along the MAR axis between 40 degrees N and 51 degrees N, with a magnitude of completeness level of m(b) approximate to 2.4. Inside the array, location errors are in the order of 2 km, and errors in the origin time are less than 1 s. From this catalog, 15 clusters were detected. The distribution of source level (SL) versus time within each cluster is used to discriminate clusters occurring in a tectonic context from those attributed to non-tectonic (i.e. volcanic or hydrothermal) processes. The location of tectonic and non-tectonic sequences correlates well with regions with positive and negative Mantle Bouguer Anomalies (MBAs), indicating the presence of thinner/colder and thicker/warmer crust respectively. At the scale of the entire array, both the complete and declustered catalogs derived from the hydroacoustic signals show an increase of the seismicity rate from the Azores up to 43 degrees 30'N suggesting a diminishing influence of the Azores hot spot on the ridge-axis temperature, and well correlated with a similar increase in the along-axis MBAs. The comparison of the MAR seismicity with the Residual MBA (RMBA) at different scales leads us to think that the low-magnitude seismicity rates are directly related to along-axis variations in lithosphere rheology and temperatures.
  • New study on the 1941 Gloria Fault earthquake and tsunami
    Publication . Baptista, Maria Ana; Miranda, Jorge Miguel; Batllo, Josep; Lisboa, Filipe; Luis, Joaquim; Macia, Ramon
    The M similar to 8.3-8.4 25 November 1941 was one of the largest submarine strike-slip earthquakes ever recorded in the Northeast (NE) Atlantic basin. This event occurred along the Eurasia-Nubia plate boundary between the Azores and the Strait of Gibraltar. After the earthquake, the tide stations in the NE Atlantic recorded a small tsunami with maximum amplitudes of 40 cm peak to through in the Azores and Madeira islands. In this study, we present a re-evaluation of the earthquake epicentre location using seismological data not included in previous studies. We invert the tsunami travel times to obtain a preliminary tsunami source location using the backward ray tracing (BRT) technique. We invert the tsunami waveforms to infer the initial sea surface displacement using empirical Green's functions, without prior assumptions about the geometry of the source. The results of the BRT simulation locate the tsunami source quite close to the new epicentre. This fact suggests that the co-seismic deformation of the earthquake induced the tsunami. The waveform inversion of tsunami data favours the conclusion that the earthquake ruptured an approximately 160 km segment of the plate boundary, in the eastern section of the Gloria Fault between -20.249 and -18.630 degrees E. The results presented here contribute to the evaluation of tsunami hazard in the Northeast Atlantic basin.
  • A first last glacial maximum to younger dryas stalagmite record from southern Portugal
    Publication . Veiga-Pires, C.; Ghaleb, Bassam; Hélie, Jean-François; Moura, Delminda; Luis, Joaquim; Hillaire-Marcel, C.
    A newly launched research program permitted the sampling of speleothem deposit in the Algarve area (Southern Portugal) with the primary objective of constraining the ages of past humid intervals in the area from U-series measurements.