Percorrer por autor "Boavida, Joana"
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- Comparison of small remotely operated vehicles and diver-operated video of circalittoral benthosPublication . Boavida, Joana; Assis, J.; Reed, John; Serrão, Ester; Gonçalves, Jorge Manuel SantosUnderwater video transect methods using small remotely operated vehicles (ROVs) and diver-operated video (DOV) are commonly used in benthic biodiversity assessments. Constraints posed by deeper waters have made surveys of the circalittoral zone (> 30 m depth), a particularly challenging problem. Here we compare benthic diversity metrics and cluster analyses obtained with ROV and DOV between 45 and 65 m depth off southwest Iberia, across local (tens to hundreds of meters) and regional scales (tens of kilometers). Results showed no difference between methods in terms of the benthic species richness, taxonomic distinctness, and beta diversity, but only minor differences in the spatial structure depicted at the regional level. At the local scale, DOV performed better at discriminating patterns likely because of the divers visual acuity. We found that small ROV and DOV are reliable and comparable methods for the study of circalittoral benthic assemblages and can be used in a complimentary way to detect the greatest amount of variation in benthic ecosystems. Our study facilitates the understanding of capabilities and limitations of two underwater video methods and provides important insight into choice of the most appropriate technique.
- Comparison of small remotely operated vehicles and diver-operated video of circalittoral benthosPublication . Boavida, Joana; Assis, J.; Reed, John; Serrão, Ester; Gonçalves, J. M. S.Underwater video transect methods using small remotely operated vehicles (ROVs) and diveroperated video (DOV) are commonly used in benthic biodiversity assessments. Constraints posed by deeper waters have made surveys of the circalittoral zone ([30 m depth), a particularly challenging problem. Here we compare benthic diversity metrics and cluster analyses obtained with ROV and DOV between 45 and 65 m depth off southwest Iberia, across local (tens to hundreds of meters) and regional scales (tens of kilometers). Results showed no difference between methods in terms of the benthic species richness, taxonomic distinctness, and beta diversity, but only minor differences in the spatial structure depicted at the regional level. At the local scale, DOV performed better at discriminating patterns likely because of the divers visual acuity. We found that small ROV and DOV are reliable and comparable methods for the study of circalittoral benthic assemblages and can be used in a complimentary way to detect the greatest amount of variation in benthic ecosystems. Our study facilitates the understanding of capabilities and limitations of two underwater video methods and provides important insight into choice of the most appropriate technique.
- Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysisPublication . Coelho, Márcio; Ledoux, Jean-Baptiste; Boavida, Joana; Paulo, Diogo; Gómez-Gras, Daniel; Bensoussan, Nathaniel; López-Sendino, Paula; Cerrano, Carlo; Kipson, Silvija; Bakran-Petricioli, Tatjana; Garrabou, Joaquim; A, Serrão; Pearson, GarethThe Gray's sea fan, Paramuricea grayi (Johnson, 1861), typically inhabits deep littoral and circalittoral habitats of the eastern temperate and tropical Atlantic Ocean. Along the Iberian Peninsula, where P. grayi is a dominant constituent of circalittoral coral gardens, two segregating lineages (yellow and purple morphotypes) were recently identified using single-copy nuclear orthologues. The mitochondrial genomes of 9 P. grayi individuals covering both color morphotypes were assembled from RNA-seq data, using samples collected at three sites in southern (Sagres and Tavira) and western (Cape Espichel) Portugal. The complete circular mitogenome is 18,668 bp in length, has an A + T-rich base composition (62.5%) and contains the 17 genes typically found in Octocorallia: 14 protein-coding genes (atp6, atp8, cob, cox1-3, mt-mutS, nad1-6, and nad4L), the small and large subunit rRNAs (rns and rnl), and one transfer RNA (trnM). The mitogenomes were nearly identical for all specimens, though we identified a noteworthy polymorphism (two SNPs 9 bp apart) in the mt-mutS of one purple individual that is shared with the sister species P. clavata. The mitogenomes of the two species have a pairwise sequence identity of 99.0%, with nad6 and mt-mutS having the highest rates of non-synonymous substitutions.
- Genetic diversity and local connectivity in the mediterranean red gorgonian coral after mass mortality eventsPublication . Pilczynska, Joanna; Cocito, Silvia; Boavida, Joana; Serrão, Ester; Queiroga, HenriqueEstimating the patterns of connectivity in marine taxa with planktonic dispersive stages is a challenging but crucial task because of its conservation implications. The red gorgonian Paramuricea clavata is a habitat forming species, characterized by short larval dispersal and high reproductive output, but low recruitment. In the recent past, the species was impacted by mass mortality events caused by increased water temperatures in summer. In the present study, we used 9 microsatellites to investigate the genetic structure and connectivity in the highly threatened populations from the Ligurian Sea (NW Mediterranean). No evidence for a recent bottleneck neither decreased genetic diversity in sites impacted by mass mortality events were found. Significant IBD pattern and high global F-ST confirmed low larval dispersal capability in the red gorgonian. The maximum dispersal distance was estimated at 20-60 km. Larval exchange between sites separated by hundreds of meters and between different depths was detected at each site, supporting the hypothesis that deeper subpopulations unaffected by surface warming peaks may provide larvae for shallower ones, enabling recovery after climatically induced mortality events.
- Genetic diversity increases with depth in red gorgonian populations of the Mediterranean Sea and the Atlantic OceanPublication . Pilczynska, Joanna; Cocito, Silvia; Boavida, Joana; Serrao, Ester; Assis, J.; Fragkopoulou, Eliza; Queiroga, HenriqueIn the ocean, the variability of environmental conditions found along depth gradients exposes populations to contrasting levels of perturbation, which can be reflected in the overall patterns of species genetic diversity. At shallow sites, resource availability may structure large, persistent and well-connected populations with higher levels of diversity. In contrast, the more extreme conditions, such as thermal stress during heat waves, can lead to population bottlenecks and genetic erosion, inverting the natural expectation. Here we examine how genetic diversity varies along depth for a long-lived, important ecosystem-structuring species, the red gorgonian, Paramuricea clavata.
- High coral bycatch in bottom-set Gillnet Coastal fisheries reveals rich coral habitats in Southern PortugalPublication . Dias, Vítor; Oliveira, Frederico; Boavida, Joana; Serrao, Ester; Gonçalves, Jorge Manuel Santos; Coelho, MárcioBottom-contact fisheries are unquestionably one of the main threats to the ecological integrity and functioning of deep-sea and circalittoral ecosystems, notably cold-water corals (CWC) and coral gardens. Lessons from the destructive impact of bottom trawling highlight the urgent need to understand how fisheries affect these vulnerable marine ecosystems. At the same time, the impact of other fishing gear and small-scale fisheries remains sparsely known despite anecdotal evidence suggesting their impact may be significant. This study aims to provide baseline information on coral bycatch by bottom-set gillnets used by artisanal fisheries in Sagres (Algarve, southwestern Portugal), thereby contributing to understand the impact of the activity but also the diversity and abundance of corals in this region. Coral bycatch frequency and species composition were quantified over two fishing seasons (summer-autumn and spring) for 42 days. The relationship with fishing effort was characterized according to metiers (n = 6). The results showed that 85% of the gillnet deployments caught corals. The maximum number of coral specimens per net was observed in a deployment targeting Lophius budegassa (n = 144). In total, 4,326 coral fragments and colonies of 22 different species were captured (fishing depth range of 57-510 m, mean 139 +/- 8 m). The most affected species were Eunicella verrucosa (32%), Paramuricea grayi (29%), Dendrophyllia cornigera (12%), and Dendrophyllia ramea (6%). The variables found to significantly influence the amount of corals caught were the target species, net length, depth, and mesh size. The 22 species of corals caught as bycatch belong to Orders Alcyonacea (80%), Scleractinia (18%), Zoantharia (1%), and Antipatharia (1%), corresponding to around 13% of the coral species known for the Portuguese mainland coast. These results show that the impact of artisanal fisheries on circalittoral coral gardens and CWC is potentially greater than previously appreciated, which underscores the need for new conservation measures and alternative fishing practices. Measures such as closure of fishing areas, frequent monitoring onboard of fishing vessels, or the development of encounter protocols in national waters are a good course of action. This study highlights the rich coral gardens of Sagres and how artisanal fisheries can pose significant threat to corals habitats in certain areas.
- Human mercury exposure levels and fish consumption at the French RivieraPublication . Petrova, Mariia, V; Ourgaud, Melanie; Boavida, Joana; Dufour, Aurelie; Onrubia, Javier A. Tesan; Lozingot, Aurelia; Heimburger-Boavida, Lars-EricHumans are exposed to methylmercury (MeHg), a bioaccumulative neurotoxin, mainly through the consumption of marine fish. Several studies showed that high MeHg exposure can lead to neurological damage. This is particularly relevant for pregnant women, because MeHg exposure negatively impacts foetal development. Populations living near the sea are generally at increased exposure risk due to higher consumption of fish and seafood. Here, we present the first study of MeHg exposure levels of the population living at the French Riviera, using mercury (Hg) concentrations in hair as a proxy for MeHg exposure. We found that older people that consume more fish presented the highest hair Hg concentrations. Compared to other Mediterranean bordering countries and other European countries, the southern France population is among those with high MeHg exposure (median for women of childbearing age is 0.56 mu g g(-1)). A global implementation of the Minamata Convention is necessary to lower MeHg exposure of the population. (C) 2020 Elsevier Ltd. All rights reserved.
- Low clonal propagation in Atlantic and Mediterranean populations of the red gorgonian Paramuricea clavata (Octocorallia)Publication . Pilczynska, Joanna; Boavida, Joana; Cocito, Silvia; Lombardi, Chiara; Peirano, Andrea; Queiroga, HenriqueClonal propagation is a common feature of benthic marine organisms. In the present study, we investigated the contribution of clonal reproduction in the red gorgonian Paramuricea clavata. Mediterranean populations of P. clavata were severely affected by mass mortality events caused by increased water temperature in 1999 and 2003. The populations are characterized by slow growth and episodic recruitment, but after the observed mortalities, an unexpectedly high recovery rate was observed in the severely affected populations from the Ligurian Sea, NW Mediterranean. Ten years after the last mortality event, we investigated the contribution of clonal propagation in populations from the Ligurian Sea, where some populations were highly affected by mass mortality events, and from the Atlantic, where mortality was never observed. All individuals were genotyped for nine microsatellite loci. The contribution of clonal reproduction varied from 0% to 13% and did not differ significantly between affected and unaffected populations. We confirm by using genetic markers that clonal propagation in P. clavata is not common, and that the contribution of clones is too low to play an important role in red gorgonian reproduction and cannot contribute to population recovery at sites that have been affected by mass mortality events.
- On the specific status of eastern mediterranean dendrophyllia corals (Cnidaria, Anthozoa): genetic characterization and speciation scenariosPublication . Aurelle, Didier; Haguenauer, Anne; Blaise, Chloé; Reynes, Lauric; Arnaud‐Haond, Sophie; Boavida, Joana; Cabau, Cédric; Klopp, Christophe; Lundalv, Tomas; Noûs, Camille; Sartoretto, Stéphane; Wienberg, Claudia; Jiménez, Carlos E.; Orejas, CovadongaThe deep-sea corals Dendrophyllia ramea and Dendrophyllia cornigera occur in Mediterranean and Atlantic waters. Both species are found in different environmental conditions, and they can colonize hard and soft substrates. These species then display an important ecological plasticity along with morphological plasticity. Nevertheless, there is a large knowledge gap on the genetic characteristics of the two species, including on the relationships between them and the possibility of cryptic species along their range. The recent discovery of Dendrophyllia populations off Cyprus in the eastern Mediterranean Sea raised new questions in this context. These corals were related to D. ramea but had some morphological differences with other known populations of this species. Here, we study the specific status of Dendrophyllia corals from Cyprus on the basis of morphology and genetics. The genetic data are interpreted by comparison with the same analysis performed on two Caryophyllia species. Both morphological and genetic data confirm that corals found off Cyprus belong to the D. ramea species. We further tested the speciation scenario using transcriptome data: the results indicate an absence of current gene flow between D. ramea and D. cornigera and that the divergence occurred more than 3 million years ago. We discuss the possible historical and ecological factors which may have shaped speciation in these species.
- Open coast seagrass restoration. Can we do it? Large scale seagrass transplantsPublication . Paulo, Diogo; Cunha, Alexandra H.; Boavida, Joana; Serrao, Ester; Gonçalves, Emanuel J.; Fonseca, MarkSome of the major challenges in seagrass restoration on exposed open coasts are the choice of transplant design that is optimal for coastlines periodically exposed to high water motion, and understanding the survival and dynamics of the transplanted areas on a long time-scale over many years. To contribute to a better understanding of these challenges, we describe here part of a large-scale seagrass restoration program conducted in a Marine Park in Portugal. The goal of this study was to infer if it was possible to recover seagrass habitat in this region, in order to restore its ecosystem functions. To infer which methods would produce better long term persistence to recover seagrass habitat, three factors were assessed: donor seagrass species, transplant season, source location. Monitoring was done three times a year for 8 years, in which areas and densities of the planted units were measured, to assess survival and growth. The best results were obtained with the species Zostera marina transplanted during spring and summer as compared to Zostera noltii and Cymodocea nodosa. Long-term persistence of established (well rooted) transplants was mainly affected by extreme winter storms but there was evidence of fish grazing effects also. Our results indicate that persistence assessments should be done in the long term, as all transplants were successful (survived and grew initially) in the short term, but were not resistant in the long term after a winter with exceptionally strong storms. The interesting observation that only the largest (11 m(2)) transplanted plot of Z marina persisted over a long time, increasing to 103 m(2) in 8 years, overcoming storms and grazing, raised the hypothesis that for a successful shift to a vegetated state it might be necessary to overpass a minimum critical size or tipping point. This hypothesis was therefore tested with replicates from two donor populations and results showed effects of size and donor population, as only the larger planting units (PUs) from one donor population persisted and expanded. It is recommended that in future habitat restoration efforts large PUs are considered.