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  • Integrated multi-trophic aquaculture systems: energy transfers and food web organization in coastal earthen ponds
    Publication . Gamito, Sofia; Quental-Ferreira, H; Parejo, A; Aubin, J; Christensen, V; Cunha, ME
    Three Ecopath models were built to reproduce 3 experimental treatments carried out in earthen ponds located in Olhao, southern Portugal, to understand the energy transferred and the ecosystem state in integrated multi-trophic aquaculture (IMTA). These earthen ponds behave as simplified ecosystems or mesocosms, with well-defined borders, where the relationships between trophic groups can be described through ecosystem modeling. Different combinations of species were produced in these ponds, corresponding to the 3 treatments: (1) fish, oysters and macroalgae (FOM); (2) fish and oysters (FO); and (3) fish and macroalgae (FM). The managed species were meagre Argyrosomus regius, white seabream Diplodus sargus, flathead grey mullet Mugil cephalus, Japanese oyster Crassostrea gigas and sea lettuce Ultra spp. The results showed that the total amount of energy throughput was 15 to 17 times higher when compared with an equivalent naturalized system. The high biomass and low recycling indicated an immature system with low resilience and low stability that demands high rates of water renewal and aeration to maintain good water-quality levels for finfish production. The addition of oysters and macroalgae in the FOM treatment appeared to improve the water quality, since oysters controlled the excess of phytoplankton produced in the ponds by ingesting a fair amount of the phytoplankton, while the macroalgae helped in the absorption of excess nutrients and created a habitat for periphyton and associated macroinvertebrates. Some ecosystem attributes of the FOM ponds approached the values of the naturalized model, suggesting a possible path towards more sustainable aquaculture.
  • Understanding the individual role of fish, oyster, phytoplankton and macroalgae in the ecology of integrated production in earthen ponds
    Publication . Cunha, M. E.; Quental-Ferreira, H.; Parejo, A.; Gamito, Sofia; Ribeiro, L.; Moreira, Márcio; Monteiro, I; Soares, F.; Pousao-Ferreira, P.
    In order to demonstrate that IMTA can be profitable and a good alternative to regular semi-intensive fish mariculture production in earthen ponds three different production treatments with distinct combinations of trophic levels were designed: (i) a combination of fish, filter feeders, phytoplankton and macroalgae, (ii) fish, filter feeders and phytoplankton and (iii) fish, phytoplankton and macroalgae, to evaluate the role of each trophic level within an Integrated Multi-Trophic Aquaculture system (IMTA). Each treatment was carried out under semi-intensive conditions with two replicates, in a total of 6 earthen ponds of 500 m(2) surface and depth of 1.5 m. The results showed that fish, oyster, phytoplankton and macroalgae integrated aquaculture is a healthy sustainable production system for mariculture in earthen ponds, providing much more fish supply compared with the other two treatments. Ponds with filter feeders had significantly lower turbidity (Nephelometric Formazin unit (FNU) of 13 in the morning and 17 in the afternoon) when compared to ponds without filter feeders (16 FNU in the morning and 20 FNU in the afternoon) with increased light penetration throughout water column (61 and 55 cm transparency in ponds with filter feeders compared to 51 cm in ponds without filter feeders) and consequently higher photosynthetic activity with significantly higher dissolved oxygen (5.4 mg L in the morning and 6.7 mg L-1 in the afternoon in ponds with filter feeders compared to 5.3 mg L-1 in the morning and 6.4 mg L-1 in the afternoon in ponds without filter feeders) and carbon sequestration (0.50 and 0.53 mg L-1 8 h(-1) in ponds with filter feeders and 0.43 mg L-1 8 h(-1) in ponds without filter feeders). In the fish, filter feeder, phytoplanton and macroalgae IMTA treatment, phytoplankton played a crucial role because they increased DO levels, removed the excess of nutrients from animal excretion, and was used as food by the filter feeders. Almost as important is the presence of filter feeders since they control the density of the microalgae and particulate matter in the ponds contributing to a more constant level of DO and higher transparency of the water column. The increased transparency and pond fertilization by oyster excretion, resulted in higher proliferation of phytoplankton (chlorophyll a concentrations of 16.5 mu gL(-1) and 20.2 mu g L-1 in ponds with filter feeder and 13.3 mu g L-1 in ponds without filter feeder) with benefits not only for filter feeders themselves but also for the macroalgae. At the end there was higher water quality and higher savings (14% day(-1)) in the energy costs for pond aeration. Meagre, white seabream and flathead grey mullet enhance their performance in IMTA systems with the presence of filter feeders with food conversion rates (FCR) of 1.52 when compared with 2.46 in the regular semi-intensive system composed by fish, phytoplankton and macroalgae. Meagre grew significantly more in IMTA systems with controlled macroalgae while white seabream and flathead grey mullet enhance their performance in the presence of macroalgae. The results show that the fish, oyster, phytoplankton and macroalgae integrated production in earthen ponds is an improved system compared to the regular semi-intensive fish production. The enhanced water quality in these systems leads to improved fish performance and higher biomass production, and to reduction in the energy power used, contributing to greater profitability.
  • The importance of habitat-type for defining the reference conditions and the ecological quality status based on benthic invertebrates: the Ria Formosa coastal lagoon (Southern Portugal) case study
    Publication . Gamito, Sofia; Patrício, Joana; Neto, João M.; Marques, João Carlos; Teixeira, Heliana
    Coastal lagoons are complex systems, with considerable habitat heterogeneity and often subject to high temporal dynamics, which constitutes a great challenge for ecological assessment programs. For defining reference conditions for benthic invertebrates, under the EU Water Framework Directive objectives, historical data from the Ria Formosa leaky lagoon (wet surface area of about 105 km2) located in Southern Portugal was used. The influence of habitat features, such as channel depth, sediment type and seagrass cover, on the expression of these biological communities was inferred by analysing subtidal data collected at stations with different environmental characteristics. Such heterogeneity effect was analysed at the community compositional and structural levels, and also for three indices included in a multimetric Benthic Assessment Tool (BAT). This tool for the assessment of ecological status includes the Margalef index, Shannon-Wiener diversity index, and AZTI’s Marine Biotic Index (AMBI). Significant variations associated with environmental features were reflected on specific reference conditions at four habitats in the lagoon. After habitat calibration, the Benthic Assessment Tool (BAT) revealed that, in general and for the period of time covered by this historical data set, the status of the lagoon corresponded to a good ecological condition, which is mainly due to its high water renewal rate. Such classification is in accordance with the majority of studies at the lagoon. However, at punctual sites with human induced high water residence times, significantly lower BAT values were registered. Such community degradation can be associated with physical stress due to salinity increase and to a degradation of water quality, with occurrence of occasional dystrophic crisis, triggered by low water renewal. Habitat 2 differentiation was a crucial step for a correct evaluation of the ecological condition of invertebrate communities across the lagoonal system.
  • Integrated assessment of bioerosion, biocover and downwearing rates of carbonate rock shore platforms in southern Portugal
    Publication . Moura, Delminda; Gabriel, Selma; Gamito, Sofia; Santos, Rui; Zugasti, Estibaliz; Gomes, A.I.; Tavares, Ana Mafalda; Martins, Ana Luísa
    Bioerosion on rocky shores has been frequently reported as an important mechanism in coastal evolution, with less attention focussed on determining the bioprotective role organisms may have in mediating coastal erosion. This work aims, for the first time, to provide an integrated assessment of both traversing microerosion meter (TMEM) downwearing rates and activity of intertidal organisms on two carbonate shore platforms in southern Portugal. Paired substations positioned on the same substrate but differing in biological cover (one with bare rock and the other with algal cover colonised between the first and final readings) were monitored for eighteen months using a TMEM. At each station, the volume of burrows produced by macro borers was measured. Downwearing rates were lower in the surfaces protected by algal turf except in the station that experienced the longest time of exposure to subaerial conditions. In contrast, TMEM downwearing rates were higher in the areas containing the higher volume of burrows. Both downwearing rates and burrow volumes were negatively correlated with the mechanical strength of the substrate as measured by Schmidt Hammer rebound.
  • Trends in water quality and subtidal benthic communities in a temperate estuary: is the response to restoration efforts hidden by climate variability and the Estuarine Quality Paradox?
    Publication . Veríssimo, Helena; Lane, Michael; Patrício, Joana; Gamito, Sofia; Marques, João Carlos
    The analysis of temporal patterns in water quality and benthic assemblages in estuaries constitutes an important methodological issue for discriminating the effects of natural and anthropogenic pressures. Temporal trends in water quality and in the subtidal benthic community over a 5-year interval in the Mondego estuary (Portugal) were investigated with the aim of assessing changes in environmental quality as a response to restoration efforts and climate variability. Particularly, we addressed the following questions: (a) Would trends in water quality and benthos behave consistently over the whole study period for the different zones of the monitoring network and indicate improvement or degradation in ecological condition? (b) Could we distinguish the effects of climate variability and restoration efforts in water quality and benthos from trend analysis results? (c) Could the response of the benthic communities and water quality be useful to guide the planning of future management actions in this system? Clear cause–effect relationships regarding the ecological response to restoration efforts and climate variability were indeed challenging to identify and interpret. In fact, the response of water quality and benthic communities to restoration efforts seemed to have been masked by the effects of climatic variability. Furthermore, the present study illustrated clearly the high environmental variability inherent to estuarine systems and the difficulty of clearly distinguishing natural from anthropogenic stressors, in agreement with the “Estuarine Quality Paradox”. Implications for ecological quality assessment and management of the Mondego estuary and other poikilohaline systems are discussed, namely with regard to the “one-out, all-out” principle required by the European Water Framework Directive (WFD).
  • Vindicating the biological and socioeconomic importance of coastal lagoons and transitional waters
    Publication . Marcos, Concepcion; Gamito, Sofia; Umgiesser, Georg; Perez-Ruzafa, Angel
    The European Congress on Coastal Lagoons celebrates this year 2018 its fifteen years of existence. Its first edition, in November 2003 in Ferrara (Italy), under the slogan “The Influence of River Basin-Coastal Zone Interactions”, opened a series of actions and opportunities that have been consolidated in the biannual celebration of this meeting, the creation of the Euro-Mediterranean Federation on Coastal Lagoons and the reinforce of national networks as Lagunet. In addition, numerous collaborations have been established in projects, publications and ex- changes that, without a doubt, are having impact in a solid and important advance in the study of these transitional ecosystems.
  • The benthic ecology of some Ria Formosa lagoons, with reference to the potential for production of the gilthead seabream (Sparua aurata L.)
    Publication . Gamito, Sofia; Raffaelli, David; Wallace, Jeffrey
    Extensive aquaculture is traditional in the Algarve, being practised in lagoons (either in special aquaculture ponds or in water reservoirs of salinas as a supplement to salt production).
  • Benthic ecology of semi-natural coastal lagoons, in the Ria Formosa (Southern Portugal), Exposed to different water renewal regimes
    Publication . Gamito, Sofia
    Several studies in semi-natural coastal lagoons in the Ria Formosa lagoonal system have been carried out. These man-made water reservoirs behave as small lagoons with one opening to the tidal channels, which may be intermittent. Because of their size, these reservoirs are ideal sites for ecological studies. Water quality and macrobenthic fauna were analysed in five water reservoirs. All reservoirs received the same incoming water through a tidal channel, but they differed in water renewal regime. Multidimensional Scaling (MDS) and Discriminant Analysis were used to evaluate the similarity among sites, stations and sampling occasions. Different levels of taxonomic resolution (family, large taxonomic groups and phylum level) were also evaluated. The separation of sites and stations became unclear using high taxonomic levels. Results from the multivariate analyses suggest a slight differentiation of the stations according to sampling occasion but a clear differentiation of the several water reservoirs. Some of the lagoons studied with low water renewal rates showed strong environmental variations. They were characterised by low diversity indexes and abundance of small-sized organisms. Other lagoons, with high water renewal rates, showed low environmental variation and well diversified and structured benthic communities. The main environmental factor that seems to affect the benthic communities was the variation in salinity between neap and spring tides, which is related with the water renewal regime. Coastal lagoons offer a protected shallow habitat, which can be highly productive. Well structured communities, controlled by k-strategists, can develop and settle in leaky lagoons, that is, lagoons with wide entrance channels and tidal currents which guarantee a good water renewal. In these lagoons, biomass can accumulate in large organisms. In contrast, lagoons with a single narrow entrance, that may be closed for long periods, are characterised by persistent physical stress and are dominated by communities of small-sized r-strategists.
  • Caution is needed when applying Margalef diversity index
    Publication . Gamito, Sofia
    The use of diversity indices has increased due to the necessity of testing different methodologies to develop the ecological status classification of water bodies within the water framework directive implementation. The Margalef diversity index is one of the indices applied within these aims. Several software packages calculate various diversity indices. However, these packages do not give any warning that for the Margalef index the data must be organized as absolute numbers and not as a density data matrix. In data expressed as number of individuals per square meter, if the sample size is lower than a square meter this index is sub estimated. With other diversity indices commonly used in ecological evaluation it is indifferent to use density data or absolute numbers since these indices only consider relative proportions in their calculus.
  • Trophic food web and ecosystem attributes of a water reservoir of the Ria Formosa (south Portugal)
    Publication . Gamito, Sofia; Erzini, Karim
    Using a top-down modelling approach, a balanced trophic food web model of a water reservoir of the Ria Formosa lagoonal system was constructed. Few adjustments of input data were necessary to run the model since most of the parameters were estimated at the study site and the characteristics of the water reservoir allowed a high degree of control and precision in terms of sampling and data collection. Trophic levels of the 14 compartments included in the model varied between 1.0 for primary producers and detritus to 3.4 for carnivorous fish and the 14 groups were aggregated in a food chain with six trophic levels. The water reservoir has a detritus based food chain, with the majority of the biomass concentrated in the first two levels, the producers level and the herbivore/detritivore level (97.6%). The transfer efficiencies were low, and decreased with increasing level number, varying between 6.0 and 0.2%. The degree of "ecosystem maturity" was difficult to establish, but several parameters indicate that it could be high. The water reservoir studied, which has similar environmental and ecological characteristics as the Ria Formosa lagoon. is near its carrying capacity. (C) 2004, Elsevier B.V. All rights reserved.